Gene name: YHL009W-A
Reference locus (S288C): YHL009W-A
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): Unknown
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000030.1:239-1480:+ | gene-YHL009W-A_CAT1 | rna-NM_001184403.1_CAT1 | cds-NP_058134.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:79069-80310:+ | gene-YHL009W-A_CENPK1137D | rna-NM_001184403.1_CENPK1137D | cds-NP_058134.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:437788-439029:- | gene-YHL009W-A_EthanolRed | rna-NM_001184403.1_EthanolRed | cds-NP_058134.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | MBWD01000011.1:239-1480:+ | gene-YHL009W-A_FaliES1 | rna-NM_001184403.1_FaliES1 | cds-NP_058134.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000212.1:1894-2449:- | gene-YHL009W-A_JAY291 | rna-NM_001184403.1_JAY291 | cds-NP_058134.1_JAY291 | 44.2 | 44.7 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:441809-442424:- | gene-YHL009W-A_NCIM3186 | rna-NM_001184403.1_NCIM3186 | cds-NP_058134.1_NCIM3186 | 49.5 | 49.5 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:462551-463792:+ | gene-YHL009W-A_PE2H3 | rna-NM_001184403.1_PE2H3 | cds-NP_058134.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:462294-463535:+ | gene-YHL009W-A_PE2H4 | rna-NM_001184403.1_PE2H4 | cds-NP_058134.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:85909-87150:+ | gene-YHL009W-A_S288C | rna-NM_001184403.1_S288C | cds-NP_058134.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000115.1:3876-5117:+ | gene-YHL009W-A_SA1 | rna-NM_001184403.1_SA1 | cds-NP_058134.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | MBWA01000006.1:239-1480:+ | gene-YHL009W-A_ThermosaccDry | rna-NM_001184403.1_ThermosaccDry | cds-NP_058134.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000190.1:4479-5720:- | gene-YHL009W-A_VR1 | rna-NM_001184403.1_VR1 | cds-NP_058134.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:797240-798317:+ | gene-YHL009W-A_Sparadoxus | rna-NM_001184403.1_Sparadoxus | cds-NP_058134.1_Sparadoxus | 66.3 | 81.4 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |