Gene name: YHC3
Reference locus (S288C): YJL059W
Gene biotype: protein_coding
Description: Amino acid transporter yhc3; Protein required for the ATP-dependent transport of arginine; vacuolar membrane protein; involved in the ATP-dependent transport of arginine into the vacuole and possibly in balancing ion homeostasis; human homolog CLN3 involved in Batten disease (juvenile onset neuronal ceroid lipofuscinosis) can complement yeast null mutant
Top 10 interactors (score): BTN2 (0.913); PMA2 (0.908); HSP30 (0.904); RHB1 (0.872); ALP1 (0.867); CAN1 (0.849); IST2 (0.811); PMA1 (0.79); YBR287W (0.768); SDO1 (0.761); AVT6 (0.747); YIF1 (0.735); AVT4 (0.71); YRA2 (0.7); AVT3 (0.699); VBA3 (0.647); ERS1 (0.635); HAS1 (0.6); AVT1 (0.599); YPR114W (0.598)
Homologues (species, bitscore): CLN3 (Homo sapiens, 200.7); Cln3 (Mus musculus, 192.2); cln3 (Danio rerio, 180.6); cln3 (Xenopus tropicalis, 150.2); cln3 (Drosophila melanogaster, 182.2); cln-3.3 (Caenorhabditis elegans, 183.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:307827-309053:+ | gene-YJL059W_AKU4011 | rna-NM_001181492.1_AKU4011 | cds-NP_012476.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:304792-306018:- | gene-YJL059W_BG1 | rna-NM_001181492.1_BG1 | cds-NP_012476.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:320361-321587:+ | gene-YJL059W_Bruggeman | rna-NM_001181492.1_Bruggeman | cds-NP_012476.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:324472-325698:+ | gene-YJL059W_CAT1 | rna-NM_001181492.1_CAT1 | cds-NP_012476.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:319481-320707:+ | gene-YJL059W_CBS1585 | rna-NM_001181492.1_CBS1585 | cds-NP_012476.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:337490-338716:+ | gene-YJL059W_CBS436 | rna-NM_001181492.1_CBS436 | cds-NP_012476.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:308585-309811:+ | gene-YJL059W_CBS6412 | rna-NM_001181492.1_CBS6412 | cds-NP_012476.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:309932-311158:+ | gene-YJL059W_CBS6413 | rna-NM_001181492.1_CBS6413 | cds-NP_012476.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:307432-308658:+ | gene-YJL059W_CENPK1137D | rna-NM_001181492.1_CENPK1137D | cds-NP_012476.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:311664-312890:+ | gene-YJL059W_EthanolRed | rna-NM_001181492.1_EthanolRed | cds-NP_012476.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:323239-324465:+ | gene-YJL059W_FaliES1 | rna-NM_001181492.1_FaliES1 | cds-NP_012476.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000138.1:120828-122054:+ | gene-YJL059W_JAY291 | rna-NM_001181492.1_JAY291 | cds-NP_012476.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:321517-322743:+ | gene-YJL059W_MUCL30387 | rna-NM_001181492.1_MUCL30387 | cds-NP_012476.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:317553-318779:+ | gene-YJL059W_MUCL30388 | rna-NM_001181492.1_MUCL30388 | cds-NP_012476.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:312235-313461:+ | gene-YJL059W_MUCL39482 | rna-NM_001181492.1_MUCL39482 | cds-NP_012476.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:318885-320111:+ | gene-YJL059W_MUCL42920 | rna-NM_001181492.1_MUCL42920 | cds-NP_012476.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:324943-326169:+ | gene-YJL059W_NCIM3186 | rna-NM_001181492.1_NCIM3186 | cds-NP_012476.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:310931-312157:+ | gene-YJL059W_NCYC1407 | rna-NM_001181492.1_NCYC1407 | cds-NP_012476.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:323282-324508:+ | gene-YJL059W_PE2H3 | rna-NM_001181492.1_PE2H3 | cds-NP_012476.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:322927-324153:+ | gene-YJL059W_PE2H4 | rna-NM_001181492.1_PE2H4 | cds-NP_012476.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:324964-326190:+ | gene-YJL059W_S288C | rna-NM_001181492.1_S288C | cds-NP_012476.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:120846-122072:+ | gene-YJL059W_SA1 | rna-NM_001181492.1_SA1 | cds-NP_012476.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:316652-317878:+ | gene-YJL059W_ThermosaccDry | rna-NM_001181492.1_ThermosaccDry | cds-NP_012476.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:318844-320070:+ | gene-YJL059W_VR1 | rna-NM_001181492.1_VR1 | cds-NP_012476.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:298029-299255:+ | gene-YJL059W_ZTW1 | rna-NM_001181492.1_ZTW1 | cds-NP_012476.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:322035-323258:+ | gene-YJL059W_Sparadoxus | rna-NM_001181492.1_Sparadoxus | cds-NP_012476.1_Sparadoxus | 89.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |