Gene name: YHC1
Reference locus (S288C): YLR298C
Gene biotype: protein_coding
Description: U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP complex required for pre-mRNA splicing; putative ortholog of human U1C protein, which is involved in formation of a complex between U1 snRNP and the pre-mRNA 5' splice site; Belongs to the U1 small nuclear ribonucleoprotein C family
Top 10 interactors (score): PRP39 (0.999); SMB1 (0.999); SMD3 (0.999); SMD2 (0.999); SMX3 (0.999); SMX2 (0.999); SNU71 (0.999); LEA1 (0.999); NAM8 (0.999); PRP11 (0.999); LUC7 (0.999); SME1 (0.999); PRP42 (0.999); MSL1 (0.999); SNP1 (0.999); SNU56 (0.999); SMD1 (0.999); PRP40 (0.999); PRP9 (0.999); MUD2 (0.999)
Homologues (species, bitscore): SNRPC (Homo sapiens, 53.1); Snrpc (Mus musculus, 53.1); snrpc (Danio rerio, 54.3); snrpc (Xenopus tropicalis, 53.1); AT4G03120 (Arabidopsis thaliana, 50.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:673527-674222:- | gene-YLR298C_AKU4011 | rna-NM_001182186.1_AKU4011 | cds-NP_013401.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:58425-59120:+ | gene-YLR298C_BG1 | rna-NM_001182186.1_BG1 | cds-NP_013401.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:709358-710053:- | gene-YLR298C_Bruggeman | rna-NM_001182186.1_Bruggeman | cds-NP_013401.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:707268-707963:- | gene-YLR298C_CAT1 | rna-NM_001182186.1_CAT1 | cds-NP_013401.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:708453-709148:- | gene-YLR298C_CBS1585 | rna-NM_001182186.1_CBS1585 | cds-NP_013401.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:693048-693743:- | gene-YLR298C_CBS436 | rna-NM_001182186.1_CBS436 | cds-NP_013401.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:671093-671788:- | gene-YLR298C_CBS6412 | rna-NM_001182186.1_CBS6412 | cds-NP_013401.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:709119-709814:- | gene-YLR298C_CBS6413 | rna-NM_001182186.1_CBS6413 | cds-NP_013401.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:709315-710010:- | gene-YLR298C_CENPK1137D | rna-NM_001182186.1_CENPK1137D | cds-NP_013401.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:666805-667500:- | gene-YLR298C_EthanolRed | rna-NM_001182186.1_EthanolRed | cds-NP_013401.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:696005-696700:- | gene-YLR298C_FaliES1 | rna-NM_001182186.1_FaliES1 | cds-NP_013401.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000359.1:9079-9774:+ | gene-YLR298C_JAY291 | rna-NM_001182186.1_JAY291 | cds-NP_013401.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:708592-709287:- | gene-YLR298C_MUCL30387 | rna-NM_001182186.1_MUCL30387 | cds-NP_013401.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:714174-714869:- | gene-YLR298C_MUCL30388 | rna-NM_001182186.1_MUCL30388 | cds-NP_013401.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:709683-710378:- | gene-YLR298C_MUCL39482 | rna-NM_001182186.1_MUCL39482 | cds-NP_013401.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:704840-705535:- | gene-YLR298C_MUCL42920 | rna-NM_001182186.1_MUCL42920 | cds-NP_013401.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:724695-725390:- | gene-YLR298C_NCIM3186 | rna-NM_001182186.1_NCIM3186 | cds-NP_013401.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:719025-719720:- | gene-YLR298C_NCYC1407 | rna-NM_001182186.1_NCYC1407 | cds-NP_013401.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:706815-707510:- | gene-YLR298C_PE2H3 | rna-NM_001182186.1_PE2H3 | cds-NP_013401.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:706559-707254:- | gene-YLR298C_PE2H4 | rna-NM_001182186.1_PE2H4 | cds-NP_013401.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:724721-725416:- | gene-YLR298C_S288C | rna-NM_001182186.1_S288C | cds-NP_013401.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000039.1:59273-59968:+ | gene-YLR298C_SA1 | rna-NM_001182186.1_SA1 | cds-NP_013401.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:697899-698594:- | gene-YLR298C_ThermosaccDry | rna-NM_001182186.1_ThermosaccDry | cds-NP_013401.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:709785-710480:- | gene-YLR298C_VR1 | rna-NM_001182186.1_VR1 | cds-NP_013401.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:36326-37021:- | gene-YLR298C_ZTW1 | rna-NM_001182186.1_ZTW1 | cds-NP_013401.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:683931-684626:- | gene-YLR298C_Sparadoxus | rna-NM_001182186.1_Sparadoxus | cds-NP_013401.1_Sparadoxus | 89.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |