Gene name: YGR161W-B
Reference locus (S288C): YGR161W-B
Gene biotype: protein_coding
Description: Transposon Ty2-F Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): GLE1 (0.697); NUP133 (0.673); NUP49 (0.453)
Homologues (species, bitscore): ENSDARP00000105592 (Danio rerio, 52.4); CRK8 (Arabidopsis thaliana, 96.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | MBVO01000065.1:260-5524:- | gene-YGR161W-B_AKU4011 | rna-NM_001184402.2_AKU4011 | cds-NP_058163.1_AKU4011 | 98.7 | 99.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000136.1:1-494:- | gene-YGR161W-B_CAT1 | rna-NM_001184402.2_CAT1 | cds-NP_058163.1_CAT1 | 9.2 | 9.2 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | MBVS01000079.1:120-5380:- | gene-YGR161W-B_CBS1585 | rna-NM_001184402.2_CBS1585 | cds-NP_058163.1_CBS1585 | 98.6 | 99.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | MBVQ01000068.1:196-5509:- | gene-YGR161W-B_CBS6412 | rna-NM_001184402.2_CBS6412 | cds-NP_058163.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | MBVP01000013.1:196-5339:- | gene-YGR161W-B_CBS6413 | rna-NM_001184402.2_CBS6413 | cds-NP_058163.1_CBS6413 | 96.4 | 96.8 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | MBWB01000032.1:169-5482:- | gene-YGR161W-B_EthanolRed | rna-NM_001184402.2_EthanolRed | cds-NP_058163.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | MBWD01000043.1:1-2894:+ | gene-YGR161W-B_FaliES1 | rna-NM_001184402.2_FaliES1 | cds-NP_058163.1_FaliES1 | 54.3 | 54.4 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000106.1:1-378:- | gene-YGR161W-B_JAY291 | rna-NM_001184402.2_JAY291 | cds-NP_058163.1_JAY291 | 7.1 | 7.1 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | MBVN01000045.1:262-5522:- | gene-YGR161W-B_MUCL39482 | rna-NM_001184402.2_MUCL39482 | cds-NP_058163.1_MUCL39482 | 98.6 | 99.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000225.1:1-1765:+ | gene-YGR161W-B_MUCL42920 | rna-NM_001184402.2_MUCL42920 | cds-NP_058163.1_MUCL42920 | 33.2 | 33.2 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:811738-817051:+ | gene-YGR161W-B_NCIM3186 | rna-NM_001184402.2_NCIM3186 | cds-NP_058163.1_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | MBVM01000094.1:262-5575:- | gene-YGR161W-B_NCYC1407 | rna-NM_001184402.2_NCYC1407 | cds-NP_058163.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:482000-487313:- | gene-YGR161W-B_PE2H3 | rna-NM_001184402.2_PE2H3 | cds-NP_058163.1_PE2H3 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:696833-702146:- | gene-YGR161W-B_PE2H4 | rna-NM_001184402.2_PE2H4 | cds-NP_058163.1_PE2H4 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:811738-817051:+ | gene-YGR161W-B_S288C | rna-NM_001184402.2_S288C | cds-NP_058163.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | MBWA01000079.1:261-5519:- | gene-YGR161W-B_ThermosaccDry | rna-NM_001184402.2_ThermosaccDry | cds-NP_058163.1_ThermosaccDry | 98.7 | 98.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:526091-531359:+ | gene-YGR161W-B_Sparadoxus | rna-NM_001184402.2_Sparadoxus | cds-NP_058163.1_Sparadoxus | 74.3 | 96.2 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |