Gene name: YGR161W-A
Reference locus (S288C): YGR161W-A
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): AAD10 (0.651); AAD6 (0.612); PMA2 (0.61); GTT2 (0.572); AQR1 (0.567); SRX1 (0.561); FLR1 (0.551); GPX2 (0.474)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | MBVO01000065.1:4257-5524:- | gene-YGR161W-A_AKU4011 | rna-NM_001184401.1_AKU4011 | cds-NP_058164.1_AKU4011 | 95.7 | 96.2 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | MBVS01000079.1:4117-5380:- | gene-YGR161W-A_CBS1585 | rna-NM_001184401.1_CBS1585 | cds-NP_058164.1_CBS1585 | 95.4 | 95.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | MBVQ01000068.1:4193-5509:- | gene-YGR161W-A_CBS6412 | rna-NM_001184401.1_CBS6412 | cds-NP_058164.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | MBVP01000013.1:4193-5339:- | gene-YGR161W-A_CBS6413 | rna-NM_001184401.1_CBS6413 | cds-NP_058164.1_CBS6413 | 86.5 | 87.0 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | MBWB01000032.1:4166-5482:- | gene-YGR161W-A_EthanolRed | rna-NM_001184401.1_EthanolRed | cds-NP_058164.1_EthanolRed | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | MBVN01000045.1:4259-5522:- | gene-YGR161W-A_MUCL39482 | rna-NM_001184401.1_MUCL39482 | cds-NP_058164.1_MUCL39482 | 95.4 | 95.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:811738-813054:+ | gene-YGR161W-A_NCIM3186 | rna-NM_001184401.1_NCIM3186 | cds-NP_058164.1_NCIM3186 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | MBVM01000094.1:4259-5575:- | gene-YGR161W-A_NCYC1407 | rna-NM_001184401.1_NCYC1407 | cds-NP_058164.1_NCYC1407 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:857595-858911:+ | gene-YGR161W-A_PE2H3 | rna-NM_001184401.1_PE2H3 | cds-NP_058164.1_PE2H3 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:862705-864021:+ | gene-YGR161W-A_PE2H4 | rna-NM_001184401.1_PE2H4 | cds-NP_058164.1_PE2H4 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:811738-813054:+ | gene-YGR161W-A_S288C | rna-NM_001184401.1_S288C | cds-NP_058164.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | MBWA01000079.1:4203-5519:- | gene-YGR161W-A_ThermosaccDry | rna-NM_001184401.1_ThermosaccDry | cds-NP_058164.1_ThermosaccDry | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:526091-527417:+ | gene-YGR161W-A_Sparadoxus | rna-NM_001184401.1_Sparadoxus | cds-NP_058164.1_Sparadoxus | 65.6 | 94.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |