YGR161C-D (YGR161C-D)

Gene profile

Gene name: YGR161C-D
Reference locus (S288C): YGR161C-D
Gene biotype: protein_coding

Description: Transposon Ty1-GR3 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): Unknown

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 93.6)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000247.1:171-2771:+ gene-YGR161C-D_Bruggeman rna-NM_001184400.4_Bruggeman cds-NP_058165.3_Bruggeman 49.3 49.3 Unannotated 1 1 0 False False False True False
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000104.1:1-817:- gene-YGR161C-D_CAT1 rna-NM_001184400.4_CAT1 cds-NP_058165.3_CAT1 15.2 15.5 Mismatch 1 1 0 False False True False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable JH711457.1:1-280:- gene-YGR161C-D_CENPK1137D rna-NM_001184400.4_CENPK1137D cds-NP_058165.3_CENPK1137D 5.3 5.3 Mismatch 1 1 0 False False True False False
EthanolRed GCA_001738615.1 Bioethanol Asia MBWB01000078.1:199-1603:+ gene-YGR161C-D_EthanolRed rna-NM_001184400.4_EthanolRed cds-NP_058165.3_EthanolRed 26.5 26.6 Mismatch 1 1 0 False False False True False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000269.1:1-302:- gene-YGR161C-D_JAY291 rna-NM_001184400.4_JAY291 cds-NP_058165.3_JAY291 5.5 5.7 Mismatch 1 1 0 False False True False False
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000226.1:1-612:+ gene-YGR161C-D_MUCL30388 rna-NM_001184400.4_MUCL30388 cds-NP_058165.3_MUCL30388 11.3 11.6 Mismatch 1 1 0 False False True False False
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000122.1:207-1777:+ gene-YGR161C-D_MUCL42920 rna-NM_001184400.4_MUCL42920 cds-NP_058165.3_MUCL42920 29.8 29.8 Unannotated 1 1 0 False False False True False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011816.1:817747-823015:- gene-YGR161C-D_NCIM3186 rna-NM_001184400.4_NCIM3186 cds-NP_058165.3_NCIM3186 95.5 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001139.9:817747-823015:- gene-YGR161C-D_S288C rna-NM_001184400.4_S288C cds-NP_058165.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000012.1:1-453:- gene-YGR161C-D_VR1 rna-NM_001184400.4_VR1 cds-NP_058165.3_VR1 8.5 8.5 Mismatch 1 1 0 False False True False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000027.1:360303-363970:- gene-YGR161C-D_ZTW1 rna-NM_001184400.4_ZTW1 cds-NP_058165.3_ZTW1 50.8 65.2 Unannotated 1 1 0 False False False True False

Additional files