Gene name: YGR161C-D
Reference locus (S288C): YGR161C-D
Gene biotype: protein_coding
Description: Transposon Ty1-GR3 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): Unknown
Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 93.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000247.1:171-2771:+ | gene-YGR161C-D_Bruggeman | rna-NM_001184400.4_Bruggeman | cds-NP_058165.3_Bruggeman | 49.3 | 49.3 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000104.1:1-817:- | gene-YGR161C-D_CAT1 | rna-NM_001184400.4_CAT1 | cds-NP_058165.3_CAT1 | 15.2 | 15.5 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | JH711457.1:1-280:- | gene-YGR161C-D_CENPK1137D | rna-NM_001184400.4_CENPK1137D | cds-NP_058165.3_CENPK1137D | 5.3 | 5.3 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | MBWB01000078.1:199-1603:+ | gene-YGR161C-D_EthanolRed | rna-NM_001184400.4_EthanolRed | cds-NP_058165.3_EthanolRed | 26.5 | 26.6 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000269.1:1-302:- | gene-YGR161C-D_JAY291 | rna-NM_001184400.4_JAY291 | cds-NP_058165.3_JAY291 | 5.5 | 5.7 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | MBVW01000226.1:1-612:+ | gene-YGR161C-D_MUCL30388 | rna-NM_001184400.4_MUCL30388 | cds-NP_058165.3_MUCL30388 | 11.3 | 11.6 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000122.1:207-1777:+ | gene-YGR161C-D_MUCL42920 | rna-NM_001184400.4_MUCL42920 | cds-NP_058165.3_MUCL42920 | 29.8 | 29.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:817747-823015:- | gene-YGR161C-D_NCIM3186 | rna-NM_001184400.4_NCIM3186 | cds-NP_058165.3_NCIM3186 | 95.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:817747-823015:- | gene-YGR161C-D_S288C | rna-NM_001184400.4_S288C | cds-NP_058165.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000012.1:1-453:- | gene-YGR161C-D_VR1 | rna-NM_001184400.4_VR1 | cds-NP_058165.3_VR1 | 8.5 | 8.5 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:360303-363970:- | gene-YGR161C-D_ZTW1 | rna-NM_001184400.4_ZTW1 | cds-NP_058165.3_ZTW1 | 50.8 | 65.2 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |