Gene name: YGR161C-C
Reference locus (S288C): YGR161C-C
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): Unknown
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:80486-81808:- | gene-YGR161C-C_BG1 | rna-NM_001184399.1_BG1 | cds-NP_058166.1_BG1 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000247.1:171-1429:+ | gene-YGR161C-C_Bruggeman | rna-NM_001184399.1_Bruggeman | cds-NP_058166.1_Bruggeman | 95.1 | 95.1 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | MBWB01000078.1:199-1521:+ | gene-YGR161C-C_EthanolRed | rna-NM_001184399.1_EthanolRed | cds-NP_058166.1_EthanolRed | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | MBVX01000311.1:197-1519:+ | gene-YGR161C-C_MUCL30387 | rna-NM_001184399.1_MUCL30387 | cds-NP_058166.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | MBVW01000175.1:171-1493:+ | gene-YGR161C-C_MUCL30388 | rna-NM_001184399.1_MUCL30388 | cds-NP_058166.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000122.1:207-1480:+ | gene-YGR161C-C_MUCL42920 | rna-NM_001184399.1_MUCL42920 | cds-NP_058166.1_MUCL42920 | 96.2 | 96.2 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:821693-823015:- | gene-YGR161C-C_NCIM3186 | rna-NM_001184399.1_NCIM3186 | cds-NP_058166.1_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:90149-91471:- | gene-YGR161C-C_PE2H3 | rna-NM_001184399.1_PE2H3 | cds-NP_058166.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:315165-316487:- | gene-YGR161C-C_PE2H4 | rna-NM_001184399.1_PE2H4 | cds-NP_058166.1_PE2H4 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:821693-823015:- | gene-YGR161C-C_S288C | rna-NM_001184399.1_S288C | cds-NP_058166.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:362733-363970:- | gene-YGR161C-C_ZTW1 | rna-NM_001184399.1_ZTW1 | cds-NP_058166.1_ZTW1 | 90.5 | 93.1 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:400128-401450:+ | gene-YGR161C-C_Sparadoxus | rna-NM_001184399.1_Sparadoxus | cds-NP_058166.1_Sparadoxus | 98.2 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |