Gene name: YGR109W-B
Reference locus (S288C): YGR109W-B
Gene biotype: protein_coding
Description: Transposon Ty3-G Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): POL3 (0.76); TFC7 (0.749); TFC8 (0.711); TFC6 (0.675); TFC3 (0.67); TFC4 (0.618); RNH1 (0.615); YER138W-A (0.583); YDR261W-B (0.583); MKC7 (0.529); TFC1 (0.525); YPS3 (0.499); YPS6 (0.499); YPS1 (0.481); SIP2 (0.48); HAP1 (0.48); YDR098C-B (0.47); DCP2 (0.454); LSM1 (0.453)
Homologues (species, bitscore): RTL1 (Homo sapiens, 89.7); Rtl1 (Mus musculus, 90.5); ENSDARP00000109033 (Danio rerio, 464.9); ENSXETP00000061875 (Xenopus tropicalis, 105.5); ORF158 (Arabidopsis thaliana, 69.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | MBVO01000034.1:315-4959:+ | gene-YGR109W-B_AKU4011 | rna-NM_001184381.2_AKU4011 | cds-NP_011624.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000400.1:530-5174:- | gene-YGR109W-B_Bruggeman | rna-NM_001184381.2_Bruggeman | cds-NP_011624.1_Bruggeman | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | MBVS01000083.1:315-4959:+ | gene-YGR109W-B_CBS1585 | rna-NM_001184381.2_CBS1585 | cds-NP_011624.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | MBVQ01000016.1:268-4912:- | gene-YGR109W-B_CBS6412 | rna-NM_001184381.2_CBS6412 | cds-NP_011624.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | MBVP01000037.1:314-4958:+ | gene-YGR109W-B_CBS6413 | rna-NM_001184381.2_CBS6413 | cds-NP_011624.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:707329-711973:+ | gene-YGR109W-B_CENPK1137D | rna-NM_001184381.2_CENPK1137D | cds-NP_011624.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | MBWB01000067.1:315-4959:+ | gene-YGR109W-B_EthanolRed | rna-NM_001184381.2_EthanolRed | cds-NP_011624.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | MBWD01000035.1:315-4959:+ | gene-YGR109W-B_FaliES1 | rna-NM_001184381.2_FaliES1 | cds-NP_011624.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | MBVX01000302.1:411-5055:+ | gene-YGR109W-B_MUCL30387 | rna-NM_001184381.2_MUCL30387 | cds-NP_011624.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | MBVW01000238.1:1-4352:+ | gene-YGR109W-B_MUCL30388 | rna-NM_001184381.2_MUCL30388 | cds-NP_011624.1_MUCL30388 | 93.0 | 93.6 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | MBVN01000041.1:315-4959:+ | gene-YGR109W-B_MUCL39482 | rna-NM_001184381.2_MUCL39482 | cds-NP_011624.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000262.1:315-4959:+ | gene-YGR109W-B_MUCL42920 | rna-NM_001184381.2_MUCL42920 | cds-NP_011624.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:707610-712254:+ | gene-YGR109W-B_NCIM3186 | rna-NM_001184381.2_NCIM3186 | cds-NP_011624.1_NCIM3186 | 96.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | MBVM01000118.1:190-4834:- | gene-YGR109W-B_NCYC1407 | rna-NM_001184381.2_NCYC1407 | cds-NP_011624.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:685855-690577:+ | gene-YGR109W-B_PE2H3 | rna-NM_001184381.2_PE2H3 | cds-NP_011624.1_PE2H3 | 97.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:690974-695696:+ | gene-YGR109W-B_PE2H4 | rna-NM_001184381.2_PE2H4 | cds-NP_011624.1_PE2H4 | 97.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:707610-712254:+ | gene-YGR109W-B_S288C | rna-NM_001184381.2_S288C | cds-NP_011624.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | MBWA01000122.1:152-4796:- | gene-YGR109W-B_ThermosaccDry | rna-NM_001184381.2_ThermosaccDry | cds-NP_011624.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:170145-174795:+ | gene-YGR109W-B_Sparadoxus | rna-NM_001184381.2_Sparadoxus | cds-NP_011624.1_Sparadoxus | 83.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |