Gene name: YGR109W-A
Reference locus (S288C): YGR109W-A
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): YJR027W (0.891); YBL005W-A (0.714); IMG1 (0.696); L9001 (0.612); PAC2 (0.575); GPT2 (0.569); YEL076C (0.555); YBR131C-A (0.526); YLL066W-B (0.526); YJL077W-A (0.526); YLR123C (0.499); YOR131C (0.489); YPR015C (0.453)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | MBVO01000034.1:315-1187:+ | gene-YGR109W-A_AKU4011 | rna-NM_001184380.3_AKU4011 | cds-NP_058162.3_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000400.1:4302-5174:- | gene-YGR109W-A_Bruggeman | rna-NM_001184380.3_Bruggeman | cds-NP_058162.3_Bruggeman | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | MBVS01000083.1:315-1187:+ | gene-YGR109W-A_CBS1585 | rna-NM_001184380.3_CBS1585 | cds-NP_058162.3_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | MBVQ01000016.1:4040-4912:- | gene-YGR109W-A_CBS6412 | rna-NM_001184380.3_CBS6412 | cds-NP_058162.3_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | MBVP01000037.1:314-1186:+ | gene-YGR109W-A_CBS6413 | rna-NM_001184380.3_CBS6413 | cds-NP_058162.3_CBS6413 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:707329-708201:+ | gene-YGR109W-A_CENPK1137D | rna-NM_001184380.3_CENPK1137D | cds-NP_058162.3_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | MBWB01000067.1:315-1187:+ | gene-YGR109W-A_EthanolRed | rna-NM_001184380.3_EthanolRed | cds-NP_058162.3_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | MBWD01000035.1:315-1187:+ | gene-YGR109W-A_FaliES1 | rna-NM_001184380.3_FaliES1 | cds-NP_058162.3_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | MBVX01000302.1:411-1283:+ | gene-YGR109W-A_MUCL30387 | rna-NM_001184380.3_MUCL30387 | cds-NP_058162.3_MUCL30387 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1047885-1048757:- | gene-YGR109W-A_MUCL30388 | rna-NM_001184380.3_MUCL30388 | cds-NP_058162.3_MUCL30388 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | MBVN01000041.1:315-1187:+ | gene-YGR109W-A_MUCL39482 | rna-NM_001184380.3_MUCL39482 | cds-NP_058162.3_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000262.1:315-1187:+ | gene-YGR109W-A_MUCL42920 | rna-NM_001184380.3_MUCL42920 | cds-NP_058162.3_MUCL42920 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:205635-206507:+ | gene-YGR109W-A_NCIM3186 | rna-NM_001184380.3_NCIM3186 | cds-NP_058162.3_NCIM3186 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | MBVM01000118.1:3962-4834:- | gene-YGR109W-A_NCYC1407 | rna-NM_001184380.3_NCYC1407 | cds-NP_058162.3_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:685855-686727:+ | gene-YGR109W-A_PE2H3 | rna-NM_001184380.3_PE2H3 | cds-NP_058162.3_PE2H3 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:690974-691846:+ | gene-YGR109W-A_PE2H4 | rna-NM_001184380.3_PE2H4 | cds-NP_058162.3_PE2H4 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:707610-708482:+ | gene-YGR109W-A_S288C | rna-NM_001184380.3_S288C | cds-NP_058162.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000085.1:1-223:- | gene-YGR109W-A_SA1 | rna-NM_001184380.3_SA1 | cds-NP_058162.3_SA1 | 25.4 | 25.5 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | MBWA01000122.1:3924-4796:- | gene-YGR109W-A_ThermosaccDry | rna-NM_001184380.3_ThermosaccDry | cds-NP_058162.3_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:81504-82379:+ | gene-YGR109W-A_Sparadoxus | rna-NM_001184380.3_Sparadoxus | cds-NP_058162.3_Sparadoxus | 82.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |