YGR038C-B (YGR038C-B)

Gene profile

Gene name: YGR038C-B
Reference locus (S288C): YGR038C-B
Gene biotype: protein_coding

Description: Transposon Ty1-GR2 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): Unknown

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 93.2)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000254.1:1-889:- gene-YGR038C-B_CAT1 rna-NM_001184434.2_CAT1 cds-NP_058160.1_CAT1 16.8 16.8 Mismatch 1 1 0 False False True False False
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000013.1:1-696:- gene-YGR038C-B_MUCL30388 rna-NM_001184434.2_MUCL30388 cds-NP_058160.1_MUCL30388 13.2 13.2 Mismatch 1 1 0 False False True False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001139.9:562199-567467:- gene-YGR038C-B_S288C rna-NM_001184434.2_S288C cds-NP_058160.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files