YGR038C-A (YGR038C-A)

Gene profile

Gene name: YGR038C-A
Reference locus (S288C): YGR038C-A
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
BG1 GCA_001932575.1 Bioethanol South America MSHP01000155.1:518053-519375:+ gene-YGR038C-A_BG1 rna-NM_001184433.1_BG1 cds-NP_058161.1_BG1 53.9 100.0 Mismatch 1 1 0 False False True False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011816.1:566145-567467:- gene-YGR038C-A_NCIM3186 rna-NM_001184433.1_NCIM3186 cds-NP_058161.1_NCIM3186 99.9 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001139.9:566145-567467:- gene-YGR038C-A_S288C rna-NM_001184433.1_S288C cds-NP_058161.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files