YGL088W (YGL088W)

Gene profile

Gene name: YGL088W
Reference locus (S288C): YGL088W
Gene biotype: protein_coding

Description: Uncharacterized protein YGL088W; Putative protein of unknown function; conserved across S. cerevisiae strains; partially overlaps snR10, a snoRNA required for preRNA processing

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005301.1:348839-349205:+ gene-YGL088W_AKU4011 rna-NM_001348836.1_AKU4011 cds-NP_001335777.1_AKU4011 98.6 100.0 Unannotated 1 1 0 False False False True False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000132.1:56211-56576:- gene-YGL088W_BG1 rna-NM_001348836.1_BG1 cds-NP_001335777.1_BG1 99.4 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005509.1:351333-351698:+ gene-YGL088W_Bruggeman rna-NM_001348836.1_Bruggeman cds-NP_001335777.1_Bruggeman 100.0 100.0 Verified 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005525.1:348226-348591:+ gene-YGL088W_CAT1 rna-NM_001348836.1_CAT1 cds-NP_001335777.1_CAT1 99.7 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005365.1:352164-352530:+ gene-YGL088W_CBS1585 rna-NM_001348836.1_CBS1585 cds-NP_001335777.1_CBS1585 98.6 100.0 Unannotated 1 1 0 False False False True False
CBS436 GCA_001738355.1 Sake Asia CM005349.1:346450-346815:+ gene-YGL088W_CBS436 rna-NM_001348836.1_CBS436 cds-NP_001335777.1_CBS436 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005333.1:336545-336911:+ gene-YGL088W_CBS6412 rna-NM_001348836.1_CBS6412 cds-NP_001335777.1_CBS6412 98.6 100.0 Unannotated 1 1 0 False False False True False
CBS6413 GCA_001738265.1 Sake Asia CM005317.1:346470-346836:+ gene-YGL088W_CBS6413 rna-NM_001348836.1_CBS6413 cds-NP_001335777.1_CBS6413 98.6 100.0 Unannotated 1 1 0 False False False True False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001528.1:346023-346388:+ gene-YGL088W_CENPK1137D rna-NM_001348836.1_CENPK1137D cds-NP_001335777.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005477.1:337924-338290:+ gene-YGL088W_EthanolRed rna-NM_001348836.1_EthanolRed cds-NP_001335777.1_EthanolRed 98.0 100.0 Unannotated 1 1 0 False False False True False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005541.1:340485-340851:+ gene-YGL088W_FaliES1 rna-NM_001348836.1_FaliES1 cds-NP_001335777.1_FaliES1 98.0 100.0 Unannotated 1 1 0 False False False True False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000369.1:26097-26462:+ gene-YGL088W_JAY291 rna-NM_001348836.1_JAY291 cds-NP_001335777.1_JAY291 99.4 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005413.1:348310-348675:+ gene-YGL088W_MUCL30387 rna-NM_001348836.1_MUCL30387 cds-NP_001335777.1_MUCL30387 100.0 100.0 Verified 1 1 1 True True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005445.1:351296-351661:+ gene-YGL088W_MUCL30388 rna-NM_001348836.1_MUCL30388 cds-NP_001335777.1_MUCL30388 100.0 100.0 Verified 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005285.1:348692-349058:+ gene-YGL088W_MUCL39482 rna-NM_001348836.1_MUCL39482 cds-NP_001335777.1_MUCL39482 98.6 100.0 Unannotated 1 1 0 False False False True False
MUCL42920 GCA_001738485.1 Bread Europe CM005429.1:353221-353586:+ gene-YGL088W_MUCL42920 rna-NM_001348836.1_MUCL42920 cds-NP_001335777.1_MUCL42920 100.0 100.0 Verified 1 1 1 True True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011816.1:345836-346201:+ gene-YGL088W_NCIM3186 rna-NM_001348836.1_NCIM3186 cds-NP_001335777.1_NCIM3186 98.9 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005269.1:340227-340593:+ gene-YGL088W_NCYC1407 rna-NM_001348836.1_NCYC1407 cds-NP_001335777.1_NCYC1407 98.6 100.0 Unannotated 1 1 0 False False False True False
PE2H3 GCA_905220325.1 Bioethanol South America HG994146.1:341863-342228:+ gene-YGL088W_PE2H3 rna-NM_001348836.1_PE2H3 cds-NP_001335777.1_PE2H3 99.4 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999878.1:346860-347225:+ gene-YGL088W_PE2H4 rna-NM_001348836.1_PE2H4 cds-NP_001335777.1_PE2H4 100.0 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001139.9:345836-346201:+ gene-YGL088W_S288C rna-NM_001348836.1_S288C cds-NP_001335777.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000089.1:23217-23582:+ gene-YGL088W_SA1 rna-NM_001348836.1_SA1 cds-NP_001335777.1_SA1 100.0 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005493.1:340738-341104:+ gene-YGL088W_ThermosaccDry rna-NM_001348836.1_ThermosaccDry cds-NP_001335777.1_ThermosaccDry 98.0 100.0 Unannotated 1 1 0 False False False True False
VR1 GCA_001738595.1 Bioethanol South America CM005461.1:450601-450966:+ gene-YGL088W_VR1 rna-NM_001348836.1_VR1 cds-NP_001335777.1_VR1 100.0 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000014.1:338092-338458:+ gene-YGL088W_ZTW1 rna-NM_001348836.1_ZTW1 cds-NP_001335777.1_ZTW1 98.6 100.0 Unannotated 1 1 0 False False False True False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047493.1:343744-344114:+ gene-YGL088W_Sparadoxus rna-NM_001348836.1_Sparadoxus cds-NP_001335777.1_Sparadoxus 84.8 96.9 Unannotated 1 1 0 False False True False False

Additional files