Gene name: YGK1
Reference locus (S288C): YGL101W
Gene biotype: protein_coding
Description: HD domain-containing protein YGL101W; Protein of unknown function; non-essential gene; interacts with the DNA helicase Hpr5p; YGL101W has a paralog, YBR242W, that arose from the whole genome duplication
Top 10 interactors (score): YNL058C (0.779); PAN2 (0.752); TOS8 (0.717); RPS21B (0.709); USE1 (0.703); HMG2 (0.698); URA1 (0.691); LSG1 (0.606); ADK1 (0.599); SEH1 (0.588); HIS1 (0.572); APM2 (0.529); ADK2 (0.452); CAF4 (0.439); OMS1 (0.419); TRP4 (0.411); SPB4 (0.404)
Homologues (species, bitscore): HDDC2 (Homo sapiens, 131.3); Hddc2 (Mus musculus, 132.5); hddc2 (Danio rerio, 124.4); hddc2 (Xenopus tropicalis, 132.9); CG11050 (Drosophila melanogaster, 119.4); F45F2.9 (Caenorhabditis elegans, 94.0); AT1G26160 (Arabidopsis thaliana, 146.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:315509-316156:+ | gene-YGL101W_AKU4011 | rna-NM_001180966.1_AKU4011 | cds-NP_011414.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:89560-90207:- | gene-YGL101W_BG1 | rna-NM_001180966.1_BG1 | cds-NP_011414.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:317663-318310:+ | gene-YGL101W_Bruggeman | rna-NM_001180966.1_Bruggeman | cds-NP_011414.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:313200-313847:+ | gene-YGL101W_CAT1 | rna-NM_001180966.1_CAT1 | cds-NP_011414.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:318833-319480:+ | gene-YGL101W_CBS1585 | rna-NM_001180966.1_CBS1585 | cds-NP_011414.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:313130-313777:+ | gene-YGL101W_CBS436 | rna-NM_001180966.1_CBS436 | cds-NP_011414.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:303526-304173:+ | gene-YGL101W_CBS6412 | rna-NM_001180966.1_CBS6412 | cds-NP_011414.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:313131-313778:+ | gene-YGL101W_CBS6413 | rna-NM_001180966.1_CBS6413 | cds-NP_011414.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:312374-313021:+ | gene-YGL101W_CENPK1137D | rna-NM_001180966.1_CENPK1137D | cds-NP_011414.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:304580-305227:+ | gene-YGL101W_EthanolRed | rna-NM_001180966.1_EthanolRed | cds-NP_011414.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:307135-307782:+ | gene-YGL101W_FaliES1 | rna-NM_001180966.1_FaliES1 | cds-NP_011414.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000046.1:39036-39683:- | gene-YGL101W_JAY291 | rna-NM_001180966.1_JAY291 | cds-NP_011414.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:314633-315280:+ | gene-YGL101W_MUCL30387 | rna-NM_001180966.1_MUCL30387 | cds-NP_011414.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:317717-318364:+ | gene-YGL101W_MUCL30388 | rna-NM_001180966.1_MUCL30388 | cds-NP_011414.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:315346-315993:+ | gene-YGL101W_MUCL39482 | rna-NM_001180966.1_MUCL39482 | cds-NP_011414.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:319296-319943:+ | gene-YGL101W_MUCL42920 | rna-NM_001180966.1_MUCL42920 | cds-NP_011414.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:312193-312840:+ | gene-YGL101W_NCIM3186 | rna-NM_001180966.1_NCIM3186 | cds-NP_011414.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:306836-307483:+ | gene-YGL101W_NCYC1407 | rna-NM_001180966.1_NCYC1407 | cds-NP_011414.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:308235-308882:+ | gene-YGL101W_PE2H3 | rna-NM_001180966.1_PE2H3 | cds-NP_011414.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:313233-313880:+ | gene-YGL101W_PE2H4 | rna-NM_001180966.1_PE2H4 | cds-NP_011414.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:312193-312840:+ | gene-YGL101W_S288C | rna-NM_001180966.1_S288C | cds-NP_011414.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000064.1:56978-57625:+ | gene-YGL101W_SA1 | rna-NM_001180966.1_SA1 | cds-NP_011414.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:307347-307994:+ | gene-YGL101W_ThermosaccDry | rna-NM_001180966.1_ThermosaccDry | cds-NP_011414.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:416951-417598:+ | gene-YGL101W_VR1 | rna-NM_001180966.1_VR1 | cds-NP_011414.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:304745-305392:+ | gene-YGL101W_ZTW1 | rna-NM_001180966.1_ZTW1 | cds-NP_011414.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:311117-311764:+ | gene-YGL101W_Sparadoxus | rna-NM_001180966.1_Sparadoxus | cds-NP_011414.1_Sparadoxus | 89.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |