Gene name: YFR006W
Reference locus (S288C): YFR006W
Gene biotype: protein_coding
Description: Uncharacterized peptidase YFR006W; Putative X-Pro aminopeptidase; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YFR006W is not an essential gene
Top 10 interactors (score): AGX1 (0.971); TPI1 (0.968); FUM1 (0.968); UGA1 (0.967); ACO1 (0.965); ENV7 (0.961); AAT1 (0.92); YMR111C (0.91); YFL012W (0.898); ALT1 (0.887); ALT2 (0.885); SOD1 (0.87); TKL2 (0.858); TKL1 (0.858); NQM1 (0.854); TAL1 (0.854); RRT5 (0.841); SER3 (0.84); SER33 (0.84); GUD1 (0.795)
Homologues (species, bitscore): PEPD (Homo sapiens, 235.3); Pepd (Mus musculus, 223.0); pepd (Danio rerio, 236.9); pepd (Xenopus tropicalis, 224.6); Dip-C (Drosophila melanogaster, 218.8); K12C11.1 (Caenorhabditis elegans, 219.9); AT4G29490 (Arabidopsis thaliana, 217.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:146588-148195:+ | gene-YFR006W_AKU4011 | rna-NM_001179971.1_AKU4011 | cds-NP_116661.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000079.1:31483-33090:+ | gene-YFR006W_BG1 | rna-NM_001179971.1_BG1 | cds-NP_116661.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:146154-147761:+ | gene-YFR006W_Bruggeman | rna-NM_001179971.1_Bruggeman | cds-NP_116661.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:151319-152926:+ | gene-YFR006W_CAT1 | rna-NM_001179971.1_CAT1 | cds-NP_116661.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:147412-149019:+ | gene-YFR006W_CBS1585 | rna-NM_001179971.1_CBS1585 | cds-NP_116661.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:121260-122867:+ | gene-YFR006W_CBS436 | rna-NM_001179971.1_CBS436 | cds-NP_116661.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:147153-148760:+ | gene-YFR006W_CBS6412 | rna-NM_001179971.1_CBS6412 | cds-NP_116661.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:149663-151270:+ | gene-YFR006W_CBS6413 | rna-NM_001179971.1_CBS6413 | cds-NP_116661.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:152276-153883:+ | gene-YFR006W_CENPK1137D | rna-NM_001179971.1_CENPK1137D | cds-NP_116661.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:145575-147182:+ | gene-YFR006W_EthanolRed | rna-NM_001179971.1_EthanolRed | cds-NP_116661.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:147222-148829:+ | gene-YFR006W_FaliES1 | rna-NM_001179971.1_FaliES1 | cds-NP_116661.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000451.1:11329-12936:+ | gene-YFR006W_JAY291 | rna-NM_001179971.1_JAY291 | cds-NP_116661.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:147785-149392:+ | gene-YFR006W_MUCL30387 | rna-NM_001179971.1_MUCL30387 | cds-NP_116661.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:145761-147368:+ | gene-YFR006W_MUCL30388 | rna-NM_001179971.1_MUCL30388 | cds-NP_116661.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:145856-147463:+ | gene-YFR006W_MUCL39482 | rna-NM_001179971.1_MUCL39482 | cds-NP_116661.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:145120-146727:+ | gene-YFR006W_MUCL42920 | rna-NM_001179971.1_MUCL42920 | cds-NP_116661.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:156144-157751:+ | gene-YFR006W_NCIM3186 | rna-NM_001179971.1_NCIM3186 | cds-NP_116661.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:146871-148478:+ | gene-YFR006W_NCYC1407 | rna-NM_001179971.1_NCYC1407 | cds-NP_116661.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:165938-167545:+ | gene-YFR006W_PE2H3 | rna-NM_001179971.1_PE2H3 | cds-NP_116661.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:165486-167093:+ | gene-YFR006W_PE2H4 | rna-NM_001179971.1_PE2H4 | cds-NP_116661.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:156145-157752:+ | gene-YFR006W_S288C | rna-NM_001179971.1_S288C | cds-NP_116661.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:166477-168084:- | gene-YFR006W_SA1 | rna-NM_001179971.1_SA1 | cds-NP_116661.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:146381-147988:+ | gene-YFR006W_ThermosaccDry | rna-NM_001179971.1_ThermosaccDry | cds-NP_116661.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:161585-163192:+ | gene-YFR006W_VR1 | rna-NM_001179971.1_VR1 | cds-NP_116661.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:76831-78438:+ | gene-YFR006W_ZTW1 | rna-NM_001179971.1_ZTW1 | cds-NP_116661.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:170018-171625:+ | gene-YFR006W_Sparadoxus | rna-NM_001179971.1_Sparadoxus | cds-NP_116661.1_Sparadoxus | 91.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |