YFL002W-B (YFL002W-B)

Gene profile

Gene name: YFL002W-B
Reference locus (S288C): YFL002W-B
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): AAD10 (0.651); AAD6 (0.612); PMA2 (0.61); GTT2 (0.572); AQR1 (0.567); SRX1 (0.561); FLR1 (0.551); GPX2 (0.474)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011816.1:573093-574409:- gene-YFL002W-B_NCIM3186 rna-NM_001184430.1_NCIM3186 cds-NP_058157.1_NCIM3186 99.0 100.0 Mismatch 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994144.1:214243-215559:- gene-YFL002W-B_PE2H3 rna-NM_001184430.1_PE2H3 cds-NP_058157.1_PE2H3 99.0 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001138.5:138204-139520:+ gene-YFL002W-B_S288C rna-NM_001184430.1_S288C cds-NP_058157.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files