YFL002W-A (YFL002W-A)

Gene profile

Gene name: YFL002W-A
Reference locus (S288C): YFL002W-A
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): GLE1 (0.697); NUP133 (0.673); NUP49 (0.453)

Homologues (species, bitscore): ENSDARP00000105592 (Danio rerio, 52.4); CRK8 (Arabidopsis thaliana, 96.3)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
FaliES1 GCA_001738715.1 Bioethanol Asia MBWD01000065.1:1-1269:- gene-YFL002W-A_FaliES1 rna-NM_001180862.2_FaliES1 cds-NP_116653.1_FaliES1 23.8 23.8 Mismatch 1 1 0 False False True False False
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000078.1:1-922:- gene-YFL002W-A_MUCL42920 rna-NM_001180862.2_MUCL42920 cds-NP_116653.1_MUCL42920 17.2 17.3 Mismatch 1 1 0 False False True False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011816.1:569095-574409:- gene-YFL002W-A_NCIM3186 rna-NM_001180862.2_NCIM3186 cds-NP_116653.1_NCIM3186 99.5 100.0 Unannotated 1 1 0 False False False True False
PE2H3 GCA_905220325.1 Bioethanol South America HG994144.1:210246-215559:- gene-YFL002W-A_PE2H3 rna-NM_001180862.2_PE2H3 cds-NP_116653.1_PE2H3 99.3 100.0 Mismatch 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999883.1:663613-668926:+ gene-YFL002W-A_PE2H4 rna-NM_001180862.2_PE2H4 cds-NP_116653.1_PE2H4 97.1 99.9 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001138.5:138204-143517:+ gene-YFL002W-A_S288C rna-NM_001180862.2_S288C cds-NP_116653.1_S288C 100.0 100.0 Mismatch 1 1 1 True True False False False

Additional files