Gene name: YFL002W-A
Reference locus (S288C): YFL002W-A
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): GLE1 (0.697); NUP133 (0.673); NUP49 (0.453)
Homologues (species, bitscore): ENSDARP00000105592 (Danio rerio, 52.4); CRK8 (Arabidopsis thaliana, 96.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | MBWD01000065.1:1-1269:- | gene-YFL002W-A_FaliES1 | rna-NM_001180862.2_FaliES1 | cds-NP_116653.1_FaliES1 | 23.8 | 23.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000078.1:1-922:- | gene-YFL002W-A_MUCL42920 | rna-NM_001180862.2_MUCL42920 | cds-NP_116653.1_MUCL42920 | 17.2 | 17.3 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:569095-574409:- | gene-YFL002W-A_NCIM3186 | rna-NM_001180862.2_NCIM3186 | cds-NP_116653.1_NCIM3186 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:210246-215559:- | gene-YFL002W-A_PE2H3 | rna-NM_001180862.2_PE2H3 | cds-NP_116653.1_PE2H3 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:663613-668926:+ | gene-YFL002W-A_PE2H4 | rna-NM_001180862.2_PE2H4 | cds-NP_116653.1_PE2H4 | 97.1 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:138204-143517:+ | gene-YFL002W-A_S288C | rna-NM_001180862.2_S288C | cds-NP_116653.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |