YER188C-A (YER188C-A)

Gene profile

Gene name: YER188C-A
Reference locus (S288C): YER188C-A
Gene biotype: protein_coding

Description: UPF0320 protein YER188C-A; Putative protein of unknown function; Belongs to the UPF0320 family

Top 10 interactors (score): YNL337W (0.915); YER189W (0.909); YRF1-2 (0.906); YJR162C (0.836); YDR543C (0.734); YNR077C (0.609); YLL065W (0.483)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005299.1:551125-551424:- gene-YER188C-A_AKU4011 rna-NM_001184633.1_AKU4011 cds-NP_878070.1_AKU4011 100.0 100.0 Verified 1 1 1 True True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000130.1:1911-2209:- gene-YER188C-A_BG1 rna-NM_001184633.1_BG1 cds-NP_878070.1_BG1 94.0 99.3 Verified 1 1 0 False False True False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005515.1:5301-5603:+ gene-YER188C-A_Bruggeman rna-NM_001184633.1_Bruggeman cds-NP_878070.1_Bruggeman 96.3 100.0 Unannotated 1 1 0 False False False False True
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000259.1:4604-4903:- gene-YER188C-A_CAT1 rna-NM_001184633.1_CAT1 cds-NP_878070.1_CAT1 100.0 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005363.1:550927-551226:- gene-YER188C-A_CBS1585 rna-NM_001184633.1_CBS1585 cds-NP_878070.1_CBS1585 100.0 100.0 Verified 1 1 1 True True False False False
CBS436 GCA_001738355.1 Sake Asia CM005354.1:597-897:+ gene-YER188C-A_CBS436 rna-NM_001184633.1_CBS436 cds-NP_878070.1_CBS436 95.0 100.0 Unannotated 1 1 0 False False False True False
CBS6412 GCA_001738345.1 Sake Asia CM005331.1:548909-549208:- gene-YER188C-A_CBS6412 rna-NM_001184633.1_CBS6412 cds-NP_878070.1_CBS6412 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6413 GCA_001738265.1 Sake Asia MBVP01000023.1:661-940:+ gene-YER188C-A_CBS6413 rna-NM_001184633.1_CBS6413 cds-NP_878070.1_CBS6413 93.3 93.3 Verified 1 1 0 False False False True False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001526.1:567370-567669:- gene-YER188C-A_CENPK1137D rna-NM_001184633.1_CENPK1137D cds-NP_878070.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005475.1:557087-557386:- gene-YER188C-A_EthanolRed rna-NM_001184633.1_EthanolRed cds-NP_878070.1_EthanolRed 99.6 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005539.1:558023-558322:- gene-YER188C-A_FaliES1 rna-NM_001184633.1_FaliES1 cds-NP_878070.1_FaliES1 99.6 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005416.1:9389-9687:+ gene-YER188C-A_MUCL30387 rna-NM_001184633.1_MUCL30387 cds-NP_878070.1_MUCL30387 95.6 99.6 Unannotated 1 1 0 False False True False False
MUCL30388 GCA_001738495.1 Bread Europe CM005448.1:5561-5859:+ gene-YER188C-A_MUCL30388 rna-NM_001184633.1_MUCL30388 cds-NP_878070.1_MUCL30388 96.0 99.6 Unannotated 1 1 0 False False True False False
MUCL39482 GCA_001738235.1 Sake Asia CM005283.1:546885-547184:- gene-YER188C-A_MUCL39482 rna-NM_001184633.1_MUCL39482 cds-NP_878070.1_MUCL39482 100.0 100.0 Verified 1 1 1 True True False False False
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000056.1:8095-8393:- gene-YER188C-A_MUCL42920 rna-NM_001184633.1_MUCL42920 cds-NP_878070.1_MUCL42920 96.0 99.6 Unannotated 1 1 0 False False True False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011814.1:569607-569906:- gene-YER188C-A_NCIM3186 rna-NM_001184633.1_NCIM3186 cds-NP_878070.1_NCIM3186 99.6 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005267.1:556337-556636:- gene-YER188C-A_NCYC1407 rna-NM_001184633.1_NCYC1407 cds-NP_878070.1_NCYC1407 100.0 100.0 Verified 1 1 1 True True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994140.1:875-1175:+ gene-YER188C-A_PE2H3 rna-NM_001184633.1_PE2H3 cds-NP_878070.1_PE2H3 95.3 100.0 Unannotated 1 1 0 False False False True False
PE2H4 GCA_905220315.1 Bioethanol South America LR999880.1:433555-433855:- gene-YER188C-A_PE2H4 rna-NM_001184633.1_PE2H4 cds-NP_878070.1_PE2H4 95.0 100.0 Unannotated 1 1 0 False False False True False
S288C GCF_000146045.2 Laboratory Not applicable NC_001137.3:569608-569907:- gene-YER188C-A_S288C rna-NM_001184633.1_S288C cds-NP_878070.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000030.1:121756-122055:- gene-YER188C-A_SA1 rna-NM_001184633.1_SA1 cds-NP_878070.1_SA1 100.0 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005491.1:558823-559122:- gene-YER188C-A_ThermosaccDry rna-NM_001184633.1_ThermosaccDry cds-NP_878070.1_ThermosaccDry 99.6 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005456.1:2473-2773:+ gene-YER188C-A_VR1 rna-NM_001184633.1_VR1 cds-NP_878070.1_VR1 95.3 100.0 Unannotated 1 1 0 False False False True False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000004.1:14165-14446:+ gene-YER188C-A_ZTW1 rna-NM_001184633.1_ZTW1 cds-NP_878070.1_ZTW1 78.5 89.6 Verified 1 1 0 False False True False False

Additional files