YER160C (YER160C)

Gene profile

Gene name: YER160C
Reference locus (S288C): YER160C
Gene biotype: protein_coding

Description: Transposon Ty1-ER2 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): SMX2 (0.693); CST26 (0.673); SNP1 (0.53)

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 99.0)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000357.1:1-696:+ gene-YER160C_MUCL30387 rna-NM_001179050.4_MUCL30387 cds-NP_011087.3_MUCL30387 13.1 13.2 Mismatch 1 1 0 False False True False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999878.1:720783-726051:+ gene-YER160C_PE2H4 rna-NM_001179050.4_PE2H4 cds-NP_011087.3_PE2H4 98.1 100.0 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001137.3:492856-498124:- gene-YER160C_S288C rna-NM_001179050.4_S288C cds-NP_011087.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files