Gene name: YER138C
Reference locus (S288C): YER138C
Gene biotype: protein_coding
Description: Transposon Ty1-ER1 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): SDS24 (0.572); YJL225C (0.517); YRF1-5 (0.454); YRF1-6 (0.452); UTP7 (0.451); YRF1-7 (0.45); YRF1-2 (0.45); YRF1-4 (0.45); MCK1 (0.411)
Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 91.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000264.1:1-744:+ | gene-YER138C_CAT1 | rna-NM_001179028.4_CAT1 | cds-NP_011064.3_CAT1 | 13.9 | 14.1 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | JH711430.1:1-538:- | gene-YER138C_CENPK1137D | rna-NM_001179028.4_CENPK1137D | cds-NP_011064.3_CENPK1137D | 10.1 | 10.1 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:443756-449024:- | gene-YER138C_S288C | rna-NM_001179028.4_S288C | cds-NP_011064.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000216.1:1-1104:- | gene-YER138C_SA1 | rna-NM_001179028.4_SA1 | cds-NP_011064.3_SA1 | 20.9 | 20.9 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |