YER138C (YER138C)

Gene profile

Gene name: YER138C
Reference locus (S288C): YER138C
Gene biotype: protein_coding

Description: Transposon Ty1-ER1 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): SDS24 (0.572); YJL225C (0.517); YRF1-5 (0.454); YRF1-6 (0.452); UTP7 (0.451); YRF1-7 (0.45); YRF1-2 (0.45); YRF1-4 (0.45); MCK1 (0.411)

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 91.3)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000264.1:1-744:+ gene-YER138C_CAT1 rna-NM_001179028.4_CAT1 cds-NP_011064.3_CAT1 13.9 14.1 Verified 1 1 0 False False True False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable JH711430.1:1-538:- gene-YER138C_CENPK1137D rna-NM_001179028.4_CENPK1137D cds-NP_011064.3_CENPK1137D 10.1 10.1 Unannotated 1 1 0 False False True False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001137.3:443756-449024:- gene-YER138C_S288C rna-NM_001179028.4_S288C cds-NP_011064.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000216.1:1-1104:- gene-YER138C_SA1 rna-NM_001179028.4_SA1 cds-NP_011064.3_SA1 20.9 20.9 Mismatch 1 1 0 False False True False False

Additional files