Gene name: YEF3
Reference locus (S288C): YLR249W
Gene biotype: protein_coding
Description: Translation elongation factor 3; contains two ABC cassettes; binds and hydrolyzes ATP; YEF3 has a paralog, HEF3, that arose from the whole genome duplication; Belongs to the ABC transporter superfamily. ABCF family. EF3 subfamily
Top 10 interactors (score): TEF1 (0.992); TEF2 (0.987); EFT1 (0.987); SSB2 (0.984); EFT2 (0.98); TEF4 (0.967); NEW1 (0.965); PAB1 (0.959); PMA1 (0.959); GCN2 (0.949); RPL3 (0.943); RPP0 (0.933); EFB1 (0.93); RPL10 (0.916); SUI2 (0.912); YDR061W (0.91); TIF2 (0.91); TIF1 (0.903); RPL5 (0.902); TIF4631 (0.893)
Homologues (species, bitscore): ABCF2 (Homo sapiens, 198.0); Abcf2 (Mus musculus, 196.4); abcf2b (Danio rerio, 198.7); abcf3 (Xenopus tropicalis, 184.1); CG1703 (Drosophila melanogaster, 201.1); abcf-1 (Caenorhabditis elegans, 192.2); ABCF4 (Arabidopsis thaliana, 194.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:590991-594125:+ | gene-YLR249W_AKU4011 | rna-NM_001182136.1_AKU4011 | cds-NP_013350.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:137777-140911:- | gene-YLR249W_BG1 | rna-NM_001182136.1_BG1 | cds-NP_013350.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:625225-628359:+ | gene-YLR249W_Bruggeman | rna-NM_001182136.1_Bruggeman | cds-NP_013350.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:624354-627488:+ | gene-YLR249W_CAT1 | rna-NM_001182136.1_CAT1 | cds-NP_013350.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:626486-629620:+ | gene-YLR249W_CBS1585 | rna-NM_001182136.1_CBS1585 | cds-NP_013350.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:610688-613822:+ | gene-YLR249W_CBS436 | rna-NM_001182136.1_CBS436 | cds-NP_013350.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:589461-592595:+ | gene-YLR249W_CBS6412 | rna-NM_001182136.1_CBS6412 | cds-NP_013350.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:626781-629915:+ | gene-YLR249W_CBS6413 | rna-NM_001182136.1_CBS6413 | cds-NP_013350.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:621421-624555:+ | gene-YLR249W_CENPK1137D | rna-NM_001182136.1_CENPK1137D | cds-NP_013350.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:585103-588237:+ | gene-YLR249W_EthanolRed | rna-NM_001182136.1_EthanolRed | cds-NP_013350.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:613940-617074:+ | gene-YLR249W_FaliES1 | rna-NM_001182136.1_FaliES1 | cds-NP_013350.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000136.1:42299-45433:- | gene-YLR249W_JAY291 | rna-NM_001182136.1_JAY291 | cds-NP_013350.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:626080-629214:+ | gene-YLR249W_MUCL30387 | rna-NM_001182136.1_MUCL30387 | cds-NP_013350.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:630209-633343:+ | gene-YLR249W_MUCL30388 | rna-NM_001182136.1_MUCL30388 | cds-NP_013350.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:627467-630601:+ | gene-YLR249W_MUCL39482 | rna-NM_001182136.1_MUCL39482 | cds-NP_013350.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:622224-625358:+ | gene-YLR249W_MUCL42920 | rna-NM_001182136.1_MUCL42920 | cds-NP_013350.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:636754-639888:+ | gene-YLR249W_NCIM3186 | rna-NM_001182136.1_NCIM3186 | cds-NP_013350.1_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:614453-617587:+ | gene-YLR249W_NCYC1407 | rna-NM_001182136.1_NCYC1407 | cds-NP_013350.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:618176-621310:+ | gene-YLR249W_PE2H3 | rna-NM_001182136.1_PE2H3 | cds-NP_013350.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:617920-621054:+ | gene-YLR249W_PE2H4 | rna-NM_001182136.1_PE2H4 | cds-NP_013350.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:636780-639914:+ | gene-YLR249W_S288C | rna-NM_001182136.1_S288C | cds-NP_013350.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:42553-45687:- | gene-YLR249W_SA1 | rna-NM_001182136.1_SA1 | cds-NP_013350.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:615949-619083:+ | gene-YLR249W_ThermosaccDry | rna-NM_001182136.1_ThermosaccDry | cds-NP_013350.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:627293-630427:+ | gene-YLR249W_VR1 | rna-NM_001182136.1_VR1 | cds-NP_013350.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:140265-143399:+ | gene-YLR249W_ZTW1 | rna-NM_001182136.1_ZTW1 | cds-NP_013350.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:602080-605214:+ | gene-YLR249W_Sparadoxus | rna-NM_001182136.1_Sparadoxus | cds-NP_013350.1_Sparadoxus | 96.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |