Gene name: YDR316W-B
Reference locus (S288C): YDR316W-B
Gene biotype: protein_coding
Description: Transposon Ty1-DR5 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): Unknown
Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 95.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000076.1:1-1540:+ | gene-YDR316W-B_CAT1 | rna-NM_001184425.2_CAT1 | cds-NP_058150.1_CAT1 | 29.2 | 29.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | MBWD01000031.1:1-1578:- | gene-YDR316W-B_FaliES1 | rna-NM_001184425.2_FaliES1 | cds-NP_058150.1_FaliES1 | 29.8 | 29.9 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | MBVW01000310.1:1-737:+ | gene-YDR316W-B_MUCL30388 | rna-NM_001184425.2_MUCL30388 | cds-NP_058150.1_MUCL30388 | 13.9 | 13.9 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1095987-1101255:+ | gene-YDR316W-B_NCIM3186 | rna-NM_001184425.2_NCIM3186 | cds-NP_058150.1_NCIM3186 | 96.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:147602-152870:+ | gene-YDR316W-B_PE2H3 | rna-NM_001184425.2_PE2H3 | cds-NP_058150.1_PE2H3 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:147321-152589:+ | gene-YDR316W-B_PE2H4 | rna-NM_001184425.2_PE2H4 | cds-NP_058150.1_PE2H4 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1096064-1101332:+ | gene-YDR316W-B_S288C | rna-NM_001184425.2_S288C | cds-NP_058150.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | MBWA01000013.1:199-1776:+ | gene-YDR316W-B_ThermosaccDry | rna-NM_001184425.2_ThermosaccDry | cds-NP_058150.1_ThermosaccDry | 29.8 | 29.9 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:572993-578261:- | gene-YDR316W-B_Sparadoxus | rna-NM_001184425.2_Sparadoxus | cds-NP_058150.1_Sparadoxus | 91.7 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |