Gene name: YDR316W-A
Reference locus (S288C): YDR316W-A
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): YLR035C-A (0.746); RHB1 (0.636); YBL113C (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:86074-87396:- | gene-YDR316W-A_BG1 | rna-NM_001184424.1_BG1 | cds-NP_058151.1_BG1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000076.1:1-1287:+ | gene-YDR316W-A_CAT1 | rna-NM_001184424.1_CAT1 | cds-NP_058151.1_CAT1 | 97.2 | 97.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | MBWD01000031.1:256-1578:- | gene-YDR316W-A_FaliES1 | rna-NM_001184424.1_FaliES1 | cds-NP_058151.1_FaliES1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1095987-1097309:+ | gene-YDR316W-A_NCIM3186 | rna-NM_001184424.1_NCIM3186 | cds-NP_058151.1_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:80218-81540:- | gene-YDR316W-A_PE2H3 | rna-NM_001184424.1_PE2H3 | cds-NP_058151.1_PE2H3 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:147321-148643:+ | gene-YDR316W-A_PE2H4 | rna-NM_001184424.1_PE2H4 | cds-NP_058151.1_PE2H4 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1096064-1097386:+ | gene-YDR316W-A_S288C | rna-NM_001184424.1_S288C | cds-NP_058151.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | MBWA01000013.1:199-1521:+ | gene-YDR316W-A_ThermosaccDry | rna-NM_001184424.1_ThermosaccDry | cds-NP_058151.1_ThermosaccDry | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:576939-578261:- | gene-YDR316W-A_Sparadoxus | rna-NM_001184424.1_Sparadoxus | cds-NP_058151.1_Sparadoxus | 98.0 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |