Gene name: YDR261W-B
Reference locus (S288C): YDR261W-B
Gene biotype: protein_coding
Description: Transposon Ty2-DR3 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): YDR098C-B (0.988); YER138W-A (0.975); HAP1 (0.925); YJR027W (0.864); YCL019W (0.687); YDR261W-A (0.687); YGR109W-B (0.583); YOR192C-C (0.547)
Homologues (species, bitscore): ENSDARP00000105592 (Danio rerio, 52.4); CRK8 (Arabidopsis thaliana, 98.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000143.1:12-1423:+ | gene-YDR261W-B_BG1 | rna-NM_001184423.4_BG1 | cds-NP_058146.3_BG1 | 20.5 | 26.3 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:568934-574247:- | gene-YDR261W-B_CENPK1137D | rna-NM_001184423.4_CENPK1137D | cds-NP_058146.3_CENPK1137D | 66.6 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000215.1:1-466:- | gene-YDR261W-B_MUCL42920 | rna-NM_001184423.4_MUCL42920 | cds-NP_058146.3_MUCL42920 | 8.6 | 8.7 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:872035-877348:+ | gene-YDR261W-B_NCIM3186 | rna-NM_001184423.4_NCIM3186 | cds-NP_058146.3_NCIM3186 | 97.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:85456-90769:+ | gene-YDR261W-B_PE2H3 | rna-NM_001184423.4_PE2H3 | cds-NP_058146.3_PE2H3 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:85413-90726:+ | gene-YDR261W-B_PE2H4 | rna-NM_001184423.4_PE2H4 | cds-NP_058146.3_PE2H4 | 98.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:981462-986775:+ | gene-YDR261W-B_S288C | rna-NM_001184423.4_S288C | cds-NP_058146.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000202.1:1-651:+ | gene-YDR261W-B_VR1 | rna-NM_001184423.4_VR1 | cds-NP_058146.3_VR1 | 12.1 | 12.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |