YDR261C-D (YDR261C-D)

Gene profile

Gene name: YDR261C-D
Reference locus (S288C): YDR261C-D
Gene biotype: protein_coding

Description: Transposon Ty1-DR4 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; Gag processing produces capsid proteins, Pol is cleaved to produce protease, reverse transcriptase and integrase activities; in YDRCTy1-3 TYB is mutant and probably non-functional

Top 10 interactors (score): Unknown

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 72.0)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
Bruggeman GCA_001738585.1 Bread Not Applicable CM005516.1:101848-102971:- gene-YDR261C-D_Bruggeman rna-NM_001184421.2_Bruggeman cds-NP_058148.1_Bruggeman 22.1 23.3 Mismatch 1 1 0 False False True False False
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000224.1:1-1625:+ gene-YDR261C-D_CAT1 rna-NM_001184421.2_CAT1 cds-NP_058148.1_CAT1 33.4 33.7 Mismatch 1 1 0 False False True False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001537.1:57975-59481:+ gene-YDR261C-D_CENPK1137D rna-NM_001184421.2_CENPK1137D cds-NP_058148.1_CENPK1137D 31.1 31.2 Mismatch 1 1 0 False False True False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000399.1:4-395:+ gene-YDR261C-D_JAY291 rna-NM_001184421.2_JAY291 cds-NP_058148.1_JAY291 7.9 8.1 Mismatch 1 1 0 False False True False False
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000324.1:1-696:- gene-YDR261C-D_MUCL30387 rna-NM_001184421.2_MUCL30387 cds-NP_058148.1_MUCL30387 14.2 14.4 Mismatch 1 1 0 False False True False False
MUCL30388 GCA_001738495.1 Bread Europe CM005450.1:477699-478491:- gene-YDR261C-D_MUCL30388 rna-NM_001184421.2_MUCL30388 cds-NP_058148.1_MUCL30388 16.4 16.4 Mismatch 1 1 0 False False True False False
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000168.1:1-1373:+ gene-YDR261C-D_MUCL42920 rna-NM_001184421.2_MUCL42920 cds-NP_058148.1_MUCL42920 28.4 28.5 Mismatch 1 1 0 False False True False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011813.1:987457-992272:- gene-YDR261C-D_NCIM3186 rna-NM_001184421.2_NCIM3186 cds-NP_058148.1_NCIM3186 92.0 100.0 Verified 1 1 0 False False True False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001136.10:987534-992349:- gene-YDR261C-D_S288C rna-NM_001184421.2_S288C cds-NP_058148.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000210.1:1-1204:- gene-YDR261C-D_SA1 rna-NM_001184421.2_SA1 cds-NP_058148.1_SA1 24.1 24.9 Mismatch 1 1 0 False False True False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000084.1:1-3000:+ gene-YDR261C-D_VR1 rna-NM_001184421.2_VR1 cds-NP_058148.1_VR1 60.3 62.2 Mismatch 1 1 0 False False True False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047494.1:5062-9870:- gene-YDR261C-D_Sparadoxus rna-NM_001184421.2_Sparadoxus cds-NP_058148.1_Sparadoxus 92.0 99.7 Mismatch 1 1 0 False False False True False

Additional files