Gene name: YDR261C-D
Reference locus (S288C): YDR261C-D
Gene biotype: protein_coding
Description: Transposon Ty1-DR4 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; Gag processing produces capsid proteins, Pol is cleaved to produce protease, reverse transcriptase and integrase activities; in YDRCTy1-3 TYB is mutant and probably non-functional
Top 10 interactors (score): Unknown
Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 72.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:101848-102971:- | gene-YDR261C-D_Bruggeman | rna-NM_001184421.2_Bruggeman | cds-NP_058148.1_Bruggeman | 22.1 | 23.3 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000224.1:1-1625:+ | gene-YDR261C-D_CAT1 | rna-NM_001184421.2_CAT1 | cds-NP_058148.1_CAT1 | 33.4 | 33.7 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:57975-59481:+ | gene-YDR261C-D_CENPK1137D | rna-NM_001184421.2_CENPK1137D | cds-NP_058148.1_CENPK1137D | 31.1 | 31.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000399.1:4-395:+ | gene-YDR261C-D_JAY291 | rna-NM_001184421.2_JAY291 | cds-NP_058148.1_JAY291 | 7.9 | 8.1 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | MBVX01000324.1:1-696:- | gene-YDR261C-D_MUCL30387 | rna-NM_001184421.2_MUCL30387 | cds-NP_058148.1_MUCL30387 | 14.2 | 14.4 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:477699-478491:- | gene-YDR261C-D_MUCL30388 | rna-NM_001184421.2_MUCL30388 | cds-NP_058148.1_MUCL30388 | 16.4 | 16.4 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000168.1:1-1373:+ | gene-YDR261C-D_MUCL42920 | rna-NM_001184421.2_MUCL42920 | cds-NP_058148.1_MUCL42920 | 28.4 | 28.5 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:987457-992272:- | gene-YDR261C-D_NCIM3186 | rna-NM_001184421.2_NCIM3186 | cds-NP_058148.1_NCIM3186 | 92.0 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:987534-992349:- | gene-YDR261C-D_S288C | rna-NM_001184421.2_S288C | cds-NP_058148.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000210.1:1-1204:- | gene-YDR261C-D_SA1 | rna-NM_001184421.2_SA1 | cds-NP_058148.1_SA1 | 24.1 | 24.9 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000084.1:1-3000:+ | gene-YDR261C-D_VR1 | rna-NM_001184421.2_VR1 | cds-NP_058148.1_VR1 | 60.3 | 62.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:5062-9870:- | gene-YDR261C-D_Sparadoxus | rna-NM_001184421.2_Sparadoxus | cds-NP_058148.1_Sparadoxus | 92.0 | 99.7 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |