YDR261C-C (YDR261C-C)

Gene profile

Gene name: YDR261C-C
Reference locus (S288C): YDR261C-C
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; Gag processing produces capsid proteins; in YDRCTy1-3 TYB is mutant and probably non-functional

Top 10 interactors (score): SCH9 (0.483); SWI6 (0.42)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011813.1:990950-992272:- gene-YDR261C-C_NCIM3186 rna-NM_001184420.1_NCIM3186 cds-NP_058149.1_NCIM3186 88.3 100.0 Mismatch 1 1 0 False False True False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001136.10:991027-992349:- gene-YDR261C-C_S288C rna-NM_001184420.1_S288C cds-NP_058149.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047490.1:1301048-1302370:+ gene-YDR261C-C_Sparadoxus rna-NM_001184420.1_Sparadoxus cds-NP_058149.1_Sparadoxus 97.6 99.7 Mismatch 1 1 1 False True False False False

Additional files