YDR239C (YDR239C)

Gene profile

Gene name: YDR239C
Reference locus (S288C): YDR239C
Gene biotype: protein_coding

Description: Uncharacterized protein YDR239C; Protein of unknown function; may interact with ribosomes, based on co-purification experiments

Top 10 interactors (score): ACK1 (0.909); RTK1 (0.869); TPO3 (0.698); ARB1 (0.495); RGD1 (0.4); TIF2 (0.4); TIF1 (0.4)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005298.1:897733-900096:- gene-YDR239C_AKU4011 rna-NM_001180547.1_AKU4011 cds-NP_010525.1_AKU4011 99.1 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000080.1:225712-228075:+ gene-YDR239C_BG1 rna-NM_001180547.1_BG1 cds-NP_010525.1_BG1 99.6 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005506.1:930059-932422:- gene-YDR239C_Bruggeman rna-NM_001180547.1_Bruggeman cds-NP_010525.1_Bruggeman 99.2 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005522.1:917344-919710:- gene-YDR239C_CAT1 rna-NM_001180547.1_CAT1 cds-NP_010525.1_CAT1 99.3 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005362.1:888082-890445:- gene-YDR239C_CBS1585 rna-NM_001180547.1_CBS1585 cds-NP_010525.1_CBS1585 99.1 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005346.1:917111-919474:- gene-YDR239C_CBS436 rna-NM_001180547.1_CBS436 cds-NP_010525.1_CBS436 99.7 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005330.1:884842-887205:- gene-YDR239C_CBS6412 rna-NM_001180547.1_CBS6412 cds-NP_010525.1_CBS6412 99.1 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005314.1:915444-917807:- gene-YDR239C_CBS6413 rna-NM_001180547.1_CBS6413 cds-NP_010525.1_CBS6413 99.1 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001525.1:939986-942349:- gene-YDR239C_CENPK1137D rna-NM_001180547.1_CENPK1137D cds-NP_010525.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005474.1:898465-900828:- gene-YDR239C_EthanolRed rna-NM_001180547.1_EthanolRed cds-NP_010525.1_EthanolRed 99.1 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005538.1:906667-909030:- gene-YDR239C_FaliES1 rna-NM_001180547.1_FaliES1 cds-NP_010525.1_FaliES1 99.1 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000348.1:2562-4925:+ gene-YDR239C_JAY291 rna-NM_001180547.1_JAY291 cds-NP_010525.1_JAY291 99.6 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005410.1:915957-918320:- gene-YDR239C_MUCL30387 rna-NM_001180547.1_MUCL30387 cds-NP_010525.1_MUCL30387 99.2 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005442.1:903987-906350:- gene-YDR239C_MUCL30388 rna-NM_001180547.1_MUCL30388 cds-NP_010525.1_MUCL30388 99.2 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005282.1:889487-891850:- gene-YDR239C_MUCL39482 rna-NM_001180547.1_MUCL39482 cds-NP_010525.1_MUCL39482 99.1 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005426.1:828761-831124:- gene-YDR239C_MUCL42920 rna-NM_001180547.1_MUCL42920 cds-NP_010525.1_MUCL42920 99.8 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011813.1:940980-943343:- gene-YDR239C_NCIM3186 rna-NM_001180547.1_NCIM3186 cds-NP_010525.1_NCIM3186 99.2 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005266.1:893155-895518:- gene-YDR239C_NCYC1407 rna-NM_001180547.1_NCYC1407 cds-NP_010525.1_NCYC1407 99.1 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994143.1:909414-911777:- gene-YDR239C_PE2H3 rna-NM_001180547.1_PE2H3 cds-NP_010525.1_PE2H3 99.6 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999875.1:914691-917054:- gene-YDR239C_PE2H4 rna-NM_001180547.1_PE2H4 cds-NP_010525.1_PE2H4 99.6 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001136.10:941057-943420:- gene-YDR239C_S288C rna-NM_001180547.1_S288C cds-NP_010525.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000013.1:147251-149614:- gene-YDR239C_SA1 rna-NM_001180547.1_SA1 cds-NP_010525.1_SA1 99.6 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005490.1:904821-907184:- gene-YDR239C_ThermosaccDry rna-NM_001180547.1_ThermosaccDry cds-NP_010525.1_ThermosaccDry 99.1 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005458.1:920014-922377:- gene-YDR239C_VR1 rna-NM_001180547.1_VR1 cds-NP_010525.1_VR1 99.7 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000007.1:167503-169866:- gene-YDR239C_ZTW1 rna-NM_001180547.1_ZTW1 cds-NP_010525.1_ZTW1 99.3 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047490.1:909676-912039:- gene-YDR239C_Sparadoxus rna-NM_001180547.1_Sparadoxus cds-NP_010525.1_Sparadoxus 86.2 99.8 Verified 1 1 1 False True False False False

Additional files