Gene name: YDR210W-B
Reference locus (S288C): YDR210W-B
Gene biotype: protein_coding
Description: Transposon Ty2-DR2 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): YBR200W-A (0.919); LSO1 (0.896); LSO2 (0.678); MAC1 (0.617); TIS11 (0.612); CUP2 (0.571); GDT1 (0.525); CIR2 (0.489)
Homologues (species, bitscore): ENSDARP00000105592 (Danio rerio, 52.4); CRK8 (Arabidopsis thaliana, 96.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000036.1:1-1539:- | gene-YDR210W-B_BG1 | rna-NM_001184419.4_BG1 | cds-NP_058142.3_BG1 | 28.7 | 28.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000067.1:1-785:- | gene-YDR210W-B_Bruggeman | rna-NM_001184419.4_Bruggeman | cds-NP_058142.3_Bruggeman | 14.7 | 14.7 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000279.1:1-1580:- | gene-YDR210W-B_CAT1 | rna-NM_001184419.4_CAT1 | cds-NP_058142.3_CAT1 | 28.8 | 29.7 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:85141-87669:+ | gene-YDR210W-B_CBS436 | rna-NM_001184419.4_CBS436 | cds-NP_058142.3_CBS436 | 47.3 | 47.5 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000395.1:1-836:+ | gene-YDR210W-B_JAY291 | rna-NM_001184419.4_JAY291 | cds-NP_058142.3_JAY291 | 15.6 | 15.7 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:78681-79159:+ | gene-YDR210W-B_MUCL42920 | rna-NM_001184419.4_MUCL42920 | cds-NP_058142.3_MUCL42920 | 8.9 | 9.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:138203-143516:+ | gene-YDR210W-B_NCIM3186 | rna-NM_001184419.4_NCIM3186 | cds-NP_058142.3_NCIM3186 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:1018709-1024022:- | gene-YDR210W-B_PE2H3 | rna-NM_001184419.4_PE2H3 | cds-NP_058142.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:1035060-1040373:- | gene-YDR210W-B_PE2H4 | rna-NM_001184419.4_PE2H4 | cds-NP_058142.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:872112-877425:+ | gene-YDR210W-B_S288C | rna-NM_001184419.4_S288C | cds-NP_058142.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000224.1:1-1027:- | gene-YDR210W-B_SA1 | rna-NM_001184419.4_SA1 | cds-NP_058142.3_SA1 | 19.3 | 19.3 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000290.1:206-2864:+ | gene-YDR210W-B_VR1 | rna-NM_001184419.4_VR1 | cds-NP_058142.3_VR1 | 49.8 | 50.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |