Gene name: YDR170W-A
Reference locus (S288C): YDR170W-A
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; YDR170W-A is part of a mutant retrotransposon; distribution in the cytoplasm becomes irregular rather than punctate upon DNA replication stress
Top 10 interactors (score): YJR084W (0.525); RTT102 (0.48)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:943771-944913:- | gene-YDR170W-A_AKU4011 | rna-NM_001184320.1_AKU4011 | cds-NP_010455.1_AKU4011 | 71.7 | 83.8 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000301.1:1-706:- | gene-YDR170W-A_CAT1 | rna-NM_001184320.1_CAT1 | cds-NP_010455.1_CAT1 | 53.0 | 53.3 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:938029-939358:- | gene-YDR170W-A_CBS1585 | rna-NM_001184320.1_CBS1585 | cds-NP_010455.1_CBS1585 | 59.1 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:791061-792383:+ | gene-YDR170W-A_CBS436 | rna-NM_001184320.1_CBS436 | cds-NP_010455.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000374.1:1-1284:+ | gene-YDR170W-A_JAY291 | rna-NM_001184320.1_JAY291 | cds-NP_010455.1_JAY291 | 96.7 | 97.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | MBVX01000218.1:617-871:+ | gene-YDR170W-A_MUCL30387 | rna-NM_001184320.1_MUCL30387 | cds-NP_010455.1_MUCL30387 | 19.2 | 19.2 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:803195-804517:+ | gene-YDR170W-A_S288C | rna-NM_001184320.1_S288C | cds-NP_010455.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000205.1:218-1326:- | gene-YDR170W-A_SA1 | rna-NM_001184320.1_SA1 | cds-NP_010455.1_SA1 | 71.2 | 83.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | MBWA01000101.1:1-655:+ | gene-YDR170W-A_ThermosaccDry | rna-NM_001184320.1_ThermosaccDry | cds-NP_010455.1_ThermosaccDry | 46.7 | 49.5 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000206.1:1-720:- | gene-YDR170W-A_VR1 | rna-NM_001184320.1_VR1 | cds-NP_010455.1_VR1 | 53.7 | 54.4 | Verified | 1 | 1 | 0 | False | False | False | True | False |