YDR098C-B (YDR098C-B)

Gene profile

Gene name: YDR098C-B
Reference locus (S288C): YDR098C-B
Gene biotype: protein_coding

Description: Transposon Ty1-DR1 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): YJR027W (0.988); YER138W-A (0.988); YDR261W-B (0.988); HAP1 (0.975); YOR192C-C (0.547); MAG1 (0.47); YGR109W-B (0.47)

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 95.1)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000233.1:1-641:- gene-YDR098C-B_MUCL30388 rna-NM_001184417.2_MUCL30388 cds-NP_058140.1_MUCL30388 12.1 12.1 Mismatch 1 1 0 False False True False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994143.1:1126513-1131781:+ gene-YDR098C-B_PE2H3 rna-NM_001184417.2_PE2H3 cds-NP_058140.1_PE2H3 98.9 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999875.1:1132098-1137366:+ gene-YDR098C-B_PE2H4 rna-NM_001184417.2_PE2H4 cds-NP_058140.1_PE2H4 98.9 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001136.10:645858-651126:- gene-YDR098C-B_S288C rna-NM_001184417.2_S288C cds-NP_058140.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files