YDR034C-D (YDR034C-D)

Gene profile

Gene name: YDR034C-D
Reference locus (S288C): YDR034C-D
Gene biotype: protein_coding

Description: Transposon Ty2-DR1 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): Unknown

Homologues (species, bitscore): ENSDARP00000105592 (Danio rerio, 52.4); CRK8 (Arabidopsis thaliana, 97.4)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000098.1:1-788:- gene-YDR034C-D_Bruggeman rna-NM_001184379.4_Bruggeman cds-NP_058138.3_Bruggeman 14.6 14.7 Mismatch 1 1 0 False False True False False
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000405.1:199-2139:+ gene-YDR034C-D_CAT1 rna-NM_001184379.4_CAT1 cds-NP_058138.3_CAT1 35.6 36.5 Verified 1 1 0 False False False True False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011813.1:513966-519279:- gene-YDR034C-D_NCIM3186 rna-NM_001184379.4_NCIM3186 cds-NP_058138.3_NCIM3186 99.9 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994144.1:452489-457802:- gene-YDR034C-D_PE2H3 rna-NM_001184379.4_PE2H3 cds-NP_058138.3_PE2H3 99.2 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999876.1:442430-447743:- gene-YDR034C-D_PE2H4 rna-NM_001184379.4_PE2H4 cds-NP_058138.3_PE2H4 99.2 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001136.10:514043-519356:- gene-YDR034C-D_S288C rna-NM_001184379.4_S288C cds-NP_058138.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files