Gene name: YDR034C-D
Reference locus (S288C): YDR034C-D
Gene biotype: protein_coding
Description: Transposon Ty2-DR1 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): Unknown
Homologues (species, bitscore): ENSDARP00000105592 (Danio rerio, 52.4); CRK8 (Arabidopsis thaliana, 97.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000098.1:1-788:- | gene-YDR034C-D_Bruggeman | rna-NM_001184379.4_Bruggeman | cds-NP_058138.3_Bruggeman | 14.6 | 14.7 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000405.1:199-2139:+ | gene-YDR034C-D_CAT1 | rna-NM_001184379.4_CAT1 | cds-NP_058138.3_CAT1 | 35.6 | 36.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:513966-519279:- | gene-YDR034C-D_NCIM3186 | rna-NM_001184379.4_NCIM3186 | cds-NP_058138.3_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:452489-457802:- | gene-YDR034C-D_PE2H3 | rna-NM_001184379.4_PE2H3 | cds-NP_058138.3_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:442430-447743:- | gene-YDR034C-D_PE2H4 | rna-NM_001184379.4_PE2H4 | cds-NP_058138.3_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:514043-519356:- | gene-YDR034C-D_S288C | rna-NM_001184379.4_S288C | cds-NP_058138.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |