YDR034C-C (YDR034C-C)

Gene profile

Gene name: YDR034C-C
Reference locus (S288C): YDR034C-C
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000021.1:1-867:- gene-YDR034C-C_Bruggeman rna-NM_001184378.1_Bruggeman cds-NP_058139.1_Bruggeman 65.7 65.8 Verified 1 1 0 False False True False False
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000405.1:199-1515:+ gene-YDR034C-C_CAT1 rna-NM_001184378.1_CAT1 cds-NP_058139.1_CAT1 97.6 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011813.1:517963-519279:- gene-YDR034C-C_NCIM3186 rna-NM_001184378.1_NCIM3186 cds-NP_058139.1_NCIM3186 99.8 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994144.1:456486-457802:- gene-YDR034C-C_PE2H3 rna-NM_001184378.1_PE2H3 cds-NP_058139.1_PE2H3 99.2 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999876.1:446427-447743:- gene-YDR034C-C_PE2H4 rna-NM_001184378.1_PE2H4 cds-NP_058139.1_PE2H4 99.2 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001136.10:518040-519356:- gene-YDR034C-C_S288C rna-NM_001184378.1_S288C cds-NP_058139.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files