Gene name: YDR034C-C
Reference locus (S288C): YDR034C-C
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): Unknown
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000021.1:1-867:- | gene-YDR034C-C_Bruggeman | rna-NM_001184378.1_Bruggeman | cds-NP_058139.1_Bruggeman | 65.7 | 65.8 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000405.1:199-1515:+ | gene-YDR034C-C_CAT1 | rna-NM_001184378.1_CAT1 | cds-NP_058139.1_CAT1 | 97.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:517963-519279:- | gene-YDR034C-C_NCIM3186 | rna-NM_001184378.1_NCIM3186 | cds-NP_058139.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:456486-457802:- | gene-YDR034C-C_PE2H3 | rna-NM_001184378.1_PE2H3 | cds-NP_058139.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:446427-447743:- | gene-YDR034C-C_PE2H4 | rna-NM_001184378.1_PE2H4 | cds-NP_058139.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:518040-519356:- | gene-YDR034C-C_S288C | rna-NM_001184378.1_S288C | cds-NP_058139.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |