Gene name: YDC1
Reference locus (S288C): YPL087W
Gene biotype: protein_coding
Description: Alkaline dihydroceramidase, involved in sphingolipid metabolism; preferentially hydrolyzes dihydroceramide to a free fatty acid and dihydrosphingosine; has a minor reverse activity; YDC1 has a paralog, YPC1, that arose from the whole genome duplication
Top 10 interactors (score): LAC1 (0.991); ISC1 (0.991); LAG1 (0.99); LCB4 (0.982); YSR3 (0.981); LCB5 (0.98); LCB3 (0.977); SUR2 (0.969); TSC10 (0.955); LCB1 (0.895); DPL1 (0.894); LCB2 (0.878); AUR1 (0.81); CSG2 (0.758); TDA4 (0.745); YPR114W (0.745); KEI1 (0.713); LIP1 (0.699); ELO2 (0.696); SCH9 (0.684)
Homologues (species, bitscore): ACER3 (Homo sapiens, 150.6); Acer3 (Mus musculus, 151.8); LOC555411 (Danio rerio, 158.3); acer3 (Xenopus tropicalis, 160.2); bwa (Drosophila melanogaster, 55.8); ATCES1 (Arabidopsis thaliana, 82.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:361199-362152:+ | gene-YPL087W_AKU4011 | rna-NM_001183901.1_AKU4011 | cds-NP_015238.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:566879-567832:+ | gene-YPL087W_BG1 | rna-NM_001183901.1_BG1 | cds-NP_015238.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:437522-438475:+ | gene-YPL087W_Bruggeman | rna-NM_001183901.1_Bruggeman | cds-NP_015238.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:477861-478814:+ | gene-YPL087W_CAT1 | rna-NM_001183901.1_CAT1 | cds-NP_015238.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:365266-366219:+ | gene-YPL087W_CBS1585 | rna-NM_001183901.1_CBS1585 | cds-NP_015238.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:379815-380768:+ | gene-YPL087W_CBS436 | rna-NM_001183901.1_CBS436 | cds-NP_015238.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:369460-370413:+ | gene-YPL087W_CBS6412 | rna-NM_001183901.1_CBS6412 | cds-NP_015238.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:361814-362767:+ | gene-YPL087W_CBS6413 | rna-NM_001183901.1_CBS6413 | cds-NP_015238.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:383451-384404:+ | gene-YPL087W_CENPK1137D | rna-NM_001183901.1_CENPK1137D | cds-NP_015238.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:359562-360515:+ | gene-YPL087W_EthanolRed | rna-NM_001183901.1_EthanolRed | cds-NP_015238.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:367392-368345:+ | gene-YPL087W_FaliES1 | rna-NM_001183901.1_FaliES1 | cds-NP_015238.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000350.1:22895-23848:- | gene-YPL087W_JAY291 | rna-NM_001183901.1_JAY291 | cds-NP_015238.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:378351-379304:+ | gene-YPL087W_MUCL30387 | rna-NM_001183901.1_MUCL30387 | cds-NP_015238.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:377154-378107:+ | gene-YPL087W_MUCL30388 | rna-NM_001183901.1_MUCL30388 | cds-NP_015238.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:358595-359548:+ | gene-YPL087W_MUCL39482 | rna-NM_001183901.1_MUCL39482 | cds-NP_015238.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:416459-417412:+ | gene-YPL087W_MUCL42920 | rna-NM_001183901.1_MUCL42920 | cds-NP_015238.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:383438-384391:+ | gene-YPL087W_NCIM3186 | rna-NM_001183901.1_NCIM3186 | cds-NP_015238.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:365206-366159:+ | gene-YPL087W_NCYC1407 | rna-NM_001183901.1_NCYC1407 | cds-NP_015238.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:372474-373427:+ | gene-YPL087W_PE2H3 | rna-NM_001183901.1_PE2H3 | cds-NP_015238.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:372097-373050:+ | gene-YPL087W_PE2H4 | rna-NM_001183901.1_PE2H4 | cds-NP_015238.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:383455-384408:+ | gene-YPL087W_S288C | rna-NM_001183901.1_S288C | cds-NP_015238.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000057.1:5571-6524:+ | gene-YPL087W_SA1 | rna-NM_001183901.1_SA1 | cds-NP_015238.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:367192-368145:+ | gene-YPL087W_ThermosaccDry | rna-NM_001183901.1_ThermosaccDry | cds-NP_015238.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:382183-383136:+ | gene-YPL087W_VR1 | rna-NM_001183901.1_VR1 | cds-NP_015238.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:366503-367456:+ | gene-YPL087W_ZTW1 | rna-NM_001183901.1_ZTW1 | cds-NP_015238.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:368129-369082:+ | gene-YPL087W_Sparadoxus | rna-NM_001183901.1_Sparadoxus | cds-NP_015238.1_Sparadoxus | 92.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |