Gene name: YCS4
Reference locus (S288C): YLR272C
Gene biotype: protein_coding
Description: Subunit of the condensin complex; required for establishment and maintenance of chromosome condensation, chromosome segregation, chromatin binding of condensin, tRNA gene clustering at the nucleolus, and silencing at the mating type locus; required for replication slow zone (RSZ) breakage following Mec1p inactivation; Belongs to the CND1 (condensin subunit 1) family
Top 10 interactors (score): SMC4 (0.999); YCG1 (0.999); SMC2 (0.999); BRN1 (0.999); IPL1 (0.985); SMC3 (0.976); NDC80 (0.976); CDC9 (0.963); POL1 (0.961); PDS5 (0.96); ESP1 (0.96); MAD2 (0.954); MCM4 (0.951); MCM3 (0.945); SMC1 (0.943); TOP2 (0.943); SMC5 (0.942); CIN8 (0.932); MCM7 (0.914); ASE1 (0.911)
Homologues (species, bitscore): NCAPD2 (Homo sapiens, 334.0); Ncapd2 (Mus musculus, 336.7); ncapd2 (Danio rerio, 327.4); ncapd2 (Xenopus tropicalis, 343.2); Cap-D2 (Drosophila melanogaster, 228.0); dpy-28 (Caenorhabditis elegans, 94.0); AT3G57060 (Arabidopsis thaliana, 316.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:631918-635451:- | gene-YLR272C_AKU4011 | rna-NM_001182159.1_AKU4011 | cds-NP_013374.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:96430-99963:+ | gene-YLR272C_BG1 | rna-NM_001182159.1_BG1 | cds-NP_013374.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:666179-669712:- | gene-YLR272C_Bruggeman | rna-NM_001182159.1_Bruggeman | cds-NP_013374.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:665364-668897:- | gene-YLR272C_CAT1 | rna-NM_001182159.1_CAT1 | cds-NP_013374.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:667413-670946:- | gene-YLR272C_CBS1585 | rna-NM_001182159.1_CBS1585 | cds-NP_013374.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:651650-655183:- | gene-YLR272C_CBS436 | rna-NM_001182159.1_CBS436 | cds-NP_013374.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:630388-633921:- | gene-YLR272C_CBS6412 | rna-NM_001182159.1_CBS6412 | cds-NP_013374.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:667709-671242:- | gene-YLR272C_CBS6413 | rna-NM_001182159.1_CBS6413 | cds-NP_013374.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:668249-671782:- | gene-YLR272C_CENPK1137D | rna-NM_001182159.1_CENPK1137D | cds-NP_013374.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:626119-629652:- | gene-YLR272C_EthanolRed | rna-NM_001182159.1_EthanolRed | cds-NP_013374.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:654950-658483:- | gene-YLR272C_FaliES1 | rna-NM_001182159.1_FaliES1 | cds-NP_013374.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000136.1:911-4444:+ | gene-YLR272C_JAY291 | rna-NM_001182159.1_JAY291 | cds-NP_013374.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:667034-670567:- | gene-YLR272C_MUCL30387 | rna-NM_001182159.1_MUCL30387 | cds-NP_013374.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:671801-675334:- | gene-YLR272C_MUCL30388 | rna-NM_001182159.1_MUCL30388 | cds-NP_013374.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:668394-671927:- | gene-YLR272C_MUCL39482 | rna-NM_001182159.1_MUCL39482 | cds-NP_013374.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:663180-666713:- | gene-YLR272C_MUCL42920 | rna-NM_001182159.1_MUCL42920 | cds-NP_013374.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:683646-687176:- | gene-YLR272C_NCIM3186 | rna-NM_001182159.1_NCIM3186 | cds-NP_013374.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:655382-658915:- | gene-YLR272C_NCYC1407 | rna-NM_001182159.1_NCYC1407 | cds-NP_013374.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:659169-662702:- | gene-YLR272C_PE2H3 | rna-NM_001182159.1_PE2H3 | cds-NP_013374.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:658913-662446:- | gene-YLR272C_PE2H4 | rna-NM_001182159.1_PE2H4 | cds-NP_013374.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:683672-687202:- | gene-YLR272C_S288C | rna-NM_001182159.1_S288C | cds-NP_013374.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:1154-4687:+ | gene-YLR272C_SA1 | rna-NM_001182159.1_SA1 | cds-NP_013374.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:656903-660436:- | gene-YLR272C_ThermosaccDry | rna-NM_001182159.1_ThermosaccDry | cds-NP_013374.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:668239-671772:- | gene-YLR272C_VR1 | rna-NM_001182159.1_VR1 | cds-NP_013374.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:181201-184734:- | gene-YLR272C_ZTW1 | rna-NM_001182159.1_ZTW1 | cds-NP_013374.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:642791-646333:- | gene-YLR272C_Sparadoxus | rna-NM_001182159.1_Sparadoxus | cds-NP_013374.1_Sparadoxus | 89.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |