YCR108C (YCR108C)

Gene profile

Gene name: YCR108C
Reference locus (S288C): YCR108C
Gene biotype: protein_coding

Description: Uncharacterized protein YCR108C; Putative protein of unknown function; identified by fungal homology and RT-PCR

Top 10 interactors (score): TBF1 (0.78)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005298.1:1475850-1476037:- gene-YCR108C_AKU4011 rna-NM_001184543.1_AKU4011 cds-NP_878059.1_AKU4011 92.7 97.9 Verified 1 1 0 False False False True False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000092.1:12986-13185:- gene-YCR108C_BG1 rna-NM_001184543.1_BG1 cds-NP_878059.1_BG1 91.5 100.0 Mismatch 1 1 0 False False False True False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005505.1:309521-309712:- gene-YCR108C_Bruggeman rna-NM_001184543.1_Bruggeman cds-NP_878059.1_Bruggeman 100.0 100.0 Verified 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005521.1:319636-319827:- gene-YCR108C_CAT1 rna-NM_001184543.1_CAT1 cds-NP_878059.1_CAT1 100.0 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005364.1:556-746:+ gene-YCR108C_CBS1585 rna-NM_001184543.1_CBS1585 cds-NP_878059.1_CBS1585 94.8 98.9 Verified 1 1 0 False False False True False
CBS436 GCA_001738355.1 Sake Asia CM005350.1:535571-535762:- gene-YCR108C_CBS436 rna-NM_001184543.1_CBS436 cds-NP_878059.1_CBS436 95.8 100.0 Unannotated 1 1 0 False False False False True
CBS6412 GCA_001738345.1 Sake Asia CM005334.1:529076-529263:- gene-YCR108C_CBS6412 rna-NM_001184543.1_CBS6412 cds-NP_878059.1_CBS6412 92.7 97.9 Mismatch 1 1 0 False False False True False
CBS6413 GCA_001738265.1 Sake Asia CM005319.1:429540-429732:- gene-YCR108C_CBS6413 rna-NM_001184543.1_CBS6413 cds-NP_878059.1_CBS6413 92.3 98.9 Verified 1 1 0 False False True False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001528.1:201-398:+ gene-YCR108C_CENPK1137D rna-NM_001184543.1_CENPK1137D cds-NP_878059.1_CENPK1137D 93.4 100.0 Mismatch 1 1 0 False False False False True
EthanolRed GCA_001738615.1 Bioethanol Asia MBWB01000011.1:356-550:- gene-YCR108C_EthanolRed rna-NM_001184543.1_EthanolRed cds-NP_878059.1_EthanolRed 92.3 98.9 Unannotated 1 1 0 False False False False True
FaliES1 GCA_001738715.1 Bioethanol Asia CM005548.1:760045-760239:- gene-YCR108C_FaliES1 rna-NM_001184543.1_FaliES1 cds-NP_878059.1_FaliES1 92.3 98.9 Unannotated 1 1 0 False False False False True
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000151.1:772-964:- gene-YCR108C_JAY291 rna-NM_001184543.1_JAY291 cds-NP_878059.1_JAY291 93.2 99.4 Verified 1 1 0 False False False True False
MUCL30387 GCA_001738515.1 Bread Europe CM005409.1:305827-306018:- gene-YCR108C_MUCL30387 rna-NM_001184543.1_MUCL30387 cds-NP_878059.1_MUCL30387 99.4 100.0 Verified 1 1 1 True True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005441.1:304326-304517:- gene-YCR108C_MUCL30388 rna-NM_001184543.1_MUCL30388 cds-NP_878059.1_MUCL30388 100.0 100.0 Verified 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005290.1:1044011-1044201:- gene-YCR108C_MUCL39482 rna-NM_001184543.1_MUCL39482 cds-NP_878059.1_MUCL39482 94.8 98.9 Verified 1 1 0 False False False True False
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000207.1:239-431:- gene-YCR108C_MUCL42920 rna-NM_001184543.1_MUCL42920 cds-NP_878059.1_MUCL42920 95.3 100.0 Mismatch 1 1 0 False False False True False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011812.1:315629-315820:- gene-YCR108C_NCIM3186 rna-NM_001184543.1_NCIM3186 cds-NP_878059.1_NCIM3186 100.0 100.0 Verified 1 1 1 True True False False False
NCYC1407 GCA_001738225.1 Sake Asia MBVM01000082.1:527-724:+ gene-YCR108C_NCYC1407 rna-NM_001184543.1_NCYC1407 cds-NP_878059.1_NCYC1407 92.4 99.4 Mismatch 1 1 0 False False False False True
PE2H3 GCA_905220325.1 Bioethanol South America HG994143.1:1475017-1475213:- gene-YCR108C_PE2H3 rna-NM_001184543.1_PE2H3 cds-NP_878059.1_PE2H3 93.9 100.0 Mismatch 1 1 0 False False False True False
PE2H4 GCA_905220315.1 Bioethanol South America LR999874.1:321873-322066:- gene-YCR108C_PE2H4 rna-NM_001184543.1_PE2H4 cds-NP_878059.1_PE2H4 97.4 100.0 Mismatch 1 1 0 False False False True False
S288C GCF_000146045.2 Laboratory Not applicable NC_001135.5:315997-316188:- gene-YCR108C_S288C rna-NM_001184543.1_S288C cds-NP_878059.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000190.1:611-802:+ gene-YCR108C_SA1 rna-NM_001184543.1_SA1 cds-NP_878059.1_SA1 100.0 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia MBWA01000062.1:307-499:- gene-YCR108C_ThermosaccDry rna-NM_001184543.1_ThermosaccDry cds-NP_878059.1_ThermosaccDry 92.7 99.4 Unannotated 1 1 0 False False False True False
VR1 GCA_001738595.1 Bioethanol South America CM005457.1:328761-328952:- gene-YCR108C_VR1 rna-NM_001184543.1_VR1 cds-NP_878059.1_VR1 100.0 100.0 Verified 1 1 1 True True False False False

Additional files