Gene name: YCR090C
Reference locus (S288C): YCR090C
Gene biotype: protein_coding
Description: UPF0587 protein YCR090C; Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YCR090C is not an essential gene
Top 10 interactors (score): APC11 (0.896); CDC45 (0.819); SOL2 (0.761); SWR1 (0.755); ERS1 (0.749); GIT1 (0.717); KIN82 (0.714); RPS13 (0.698); RPS15 (0.697); PHO5 (0.695); KGD2 (0.691); SRB8 (0.69); IMD2 (0.675); ESS1 (0.667); BDF1 (0.616); ATP1 (0.606); MSS4 (0.601); YPL225W (0.598); RPB10 (0.58); MRP7 (0.57)
Homologues (species, bitscore): C1orf123 (Homo sapiens, 59.3); Czib (Mus musculus, 62.4); C2H1orf123 (Danio rerio, 60.1); c1orf123 (Xenopus tropicalis, 52.8); F46B6.12 (Caenorhabditis elegans, 53.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:267257-267805:- | gene-YCR090C_AKU4011 | rna-NM_001178796.1_AKU4011 | cds-NP_010014.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:125557-126105:- | gene-YCR090C_BG1 | rna-NM_001178796.1_BG1 | cds-NP_010014.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:264068-264616:- | gene-YCR090C_Bruggeman | rna-NM_001178796.1_Bruggeman | cds-NP_010014.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:274062-274610:- | gene-YCR090C_CAT1 | rna-NM_001178796.1_CAT1 | cds-NP_010014.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:262003-262551:- | gene-YCR090C_CBS1585 | rna-NM_001178796.1_CBS1585 | cds-NP_010014.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:273394-273942:- | gene-YCR090C_CBS436 | rna-NM_001178796.1_CBS436 | cds-NP_010014.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:253150-253698:- | gene-YCR090C_CBS6412 | rna-NM_001178796.1_CBS6412 | cds-NP_010014.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:267703-268251:- | gene-YCR090C_CBS6413 | rna-NM_001178796.1_CBS6413 | cds-NP_010014.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:271546-272094:- | gene-YCR090C_CENPK1137D | rna-NM_001178796.1_CENPK1137D | cds-NP_010014.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:262901-263449:- | gene-YCR090C_EthanolRed | rna-NM_001178796.1_EthanolRed | cds-NP_010014.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:269001-269549:- | gene-YCR090C_FaliES1 | rna-NM_001178796.1_FaliES1 | cds-NP_010014.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000323.1:20263-20811:+ | gene-YCR090C_JAY291 | rna-NM_001178796.1_JAY291 | cds-NP_010014.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:260869-261417:- | gene-YCR090C_MUCL30387 | rna-NM_001178796.1_MUCL30387 | cds-NP_010014.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:259689-260237:- | gene-YCR090C_MUCL30388 | rna-NM_001178796.1_MUCL30388 | cds-NP_010014.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:268647-269195:- | gene-YCR090C_MUCL39482 | rna-NM_001178796.1_MUCL39482 | cds-NP_010014.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:264860-265408:- | gene-YCR090C_MUCL42920 | rna-NM_001178796.1_MUCL42920 | cds-NP_010014.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:271947-272495:- | gene-YCR090C_NCIM3186 | rna-NM_001178796.1_NCIM3186 | cds-NP_010014.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:269290-269838:- | gene-YCR090C_NCYC1407 | rna-NM_001178796.1_NCYC1407 | cds-NP_010014.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:283575-284123:- | gene-YCR090C_PE2H3 | rna-NM_001178796.1_PE2H3 | cds-NP_010014.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:272127-272675:- | gene-YCR090C_PE2H4 | rna-NM_001178796.1_PE2H4 | cds-NP_010014.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:272315-272863:- | gene-YCR090C_S288C | rna-NM_001178796.1_S288C | cds-NP_010014.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000044.1:72306-72854:- | gene-YCR090C_SA1 | rna-NM_001178796.1_SA1 | cds-NP_010014.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:268954-269502:- | gene-YCR090C_ThermosaccDry | rna-NM_001178796.1_ThermosaccDry | cds-NP_010014.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:279116-279664:- | gene-YCR090C_VR1 | rna-NM_001178796.1_VR1 | cds-NP_010014.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:265661-266209:- | gene-YCR090C_ZTW1 | rna-NM_001178796.1_ZTW1 | cds-NP_010014.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:300190-300738:- | gene-YCR090C_Sparadoxus | rna-NM_001178796.1_Sparadoxus | cds-NP_010014.1_Sparadoxus | 88.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |