Gene name: YCR087C-A
Reference locus (S288C): YCR087C-A
Gene biotype: protein_coding
Description: Cell growth-regulating nucleolar protein; UPF0743 protein YCR087C-A; Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus; YCR087C-A is not an essential gene; Belongs to the UPF0743 family
Top 10 interactors (score): KRR1 (0.987); BRX1 (0.986); RRP1 (0.984); PWP1 (0.981); RPF2 (0.979); BCP1 (0.977); NIP7 (0.976); NUG1 (0.976); LHP1 (0.974); ROK1 (0.973); UTP25 (0.971); RPA43 (0.971); SDA1 (0.97); NOP7 (0.97); DRS1 (0.968); EBP2 (0.966); NHP2 (0.966); ESF2 (0.965); NOC2 (0.964); DIM1 (0.962)
Homologues (species, bitscore): LYAR (Homo sapiens, 61.2); Lyar (Mus musculus, 55.1); lyar (Xenopus tropicalis, 62.0); C16C10.8 (Caenorhabditis elegans, 55.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:258509-258958:- | gene-YCR087C-A_AKU4011 | rna-NM_001184316.1_AKU4011 | cds-NP_010011.1_AKU4011 | 97.1 | 97.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:117263-117709:- | gene-YCR087C-A_BG1 | rna-NM_001184316.1_BG1 | cds-NP_010011.1_BG1 | 96.1 | 96.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:254715-255149:- | gene-YCR087C-A_Bruggeman | rna-NM_001184316.1_Bruggeman | cds-NP_010011.1_Bruggeman | 93.5 | 94.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:265768-266214:- | gene-YCR087C-A_CAT1 | rna-NM_001184316.1_CAT1 | cds-NP_010011.1_CAT1 | 96.1 | 96.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:253324-253773:- | gene-YCR087C-A_CBS1585 | rna-NM_001184316.1_CBS1585 | cds-NP_010011.1_CBS1585 | 97.1 | 97.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:265100-265546:- | gene-YCR087C-A_CBS436 | rna-NM_001184316.1_CBS436 | cds-NP_010011.1_CBS436 | 96.1 | 96.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:244676-245125:- | gene-YCR087C-A_CBS6412 | rna-NM_001184316.1_CBS6412 | cds-NP_010011.1_CBS6412 | 97.1 | 97.4 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:259374-259823:- | gene-YCR087C-A_CBS6413 | rna-NM_001184316.1_CBS6413 | cds-NP_010011.1_CBS6413 | 97.1 | 97.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:263389-263850:- | gene-YCR087C-A_CENPK1137D | rna-NM_001184316.1_CENPK1137D | cds-NP_010011.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:254324-254785:- | gene-YCR087C-A_EthanolRed | rna-NM_001184316.1_EthanolRed | cds-NP_010011.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:259687-260148:- | gene-YCR087C-A_FaliES1 | rna-NM_001184316.1_FaliES1 | cds-NP_010011.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000323.1:28658-29104:+ | gene-YCR087C-A_JAY291 | rna-NM_001184316.1_JAY291 | cds-NP_010011.1_JAY291 | 96.1 | 96.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:251843-252277:- | gene-YCR087C-A_MUCL30387 | rna-NM_001184316.1_MUCL30387 | cds-NP_010011.1_MUCL30387 | 93.5 | 94.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:251710-252156:- | gene-YCR087C-A_MUCL30388 | rna-NM_001184316.1_MUCL30388 | cds-NP_010011.1_MUCL30388 | 96.1 | 96.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:259888-260337:- | gene-YCR087C-A_MUCL39482 | rna-NM_001184316.1_MUCL39482 | cds-NP_010011.1_MUCL39482 | 97.1 | 97.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:256293-256754:- | gene-YCR087C-A_MUCL42920 | rna-NM_001184316.1_MUCL42920 | cds-NP_010011.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:263638-264099:- | gene-YCR087C-A_NCIM3186 | rna-NM_001184316.1_NCIM3186 | cds-NP_010011.1_NCIM3186 | 97.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:260727-261176:- | gene-YCR087C-A_NCYC1407 | rna-NM_001184316.1_NCYC1407 | cds-NP_010011.1_NCYC1407 | 97.1 | 97.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:275281-275727:- | gene-YCR087C-A_PE2H3 | rna-NM_001184316.1_PE2H3 | cds-NP_010011.1_PE2H3 | 96.1 | 96.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:263833-264279:- | gene-YCR087C-A_PE2H4 | rna-NM_001184316.1_PE2H4 | cds-NP_010011.1_PE2H4 | 96.1 | 96.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:264006-264467:- | gene-YCR087C-A_S288C | rna-NM_001184316.1_S288C | cds-NP_010011.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000044.1:63853-64299:- | gene-YCR087C-A_SA1 | rna-NM_001184316.1_SA1 | cds-NP_010011.1_SA1 | 96.3 | 96.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:259614-260075:- | gene-YCR087C-A_ThermosaccDry | rna-NM_001184316.1_ThermosaccDry | cds-NP_010011.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:270822-271268:- | gene-YCR087C-A_VR1 | rna-NM_001184316.1_VR1 | cds-NP_010011.1_VR1 | 96.1 | 96.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:257467-257916:- | gene-YCR087C-A_ZTW1 | rna-NM_001184316.1_ZTW1 | cds-NP_010011.1_ZTW1 | 97.1 | 97.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:291596-292027:- | gene-YCR087C-A_Sparadoxus | rna-NM_001184316.1_Sparadoxus | cds-NP_010011.1_Sparadoxus | 85.0 | 93.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |