Gene name: YCR007C
Reference locus (S288C): YCR007C
Gene biotype: protein_coding
Description: DUP240 protein YCR007C; Putative integral membrane protein; member of DUP240 gene family; SWAT-GFP and mCherry fusion proteins localize to the cell periphery and vacuole; YCR007C is not an essential gene
Top 10 interactors (score): YIR020C (0.76); YCR022C (0.76); YGR176W (0.745); MAK32 (0.744); ZRG8 (0.712); HHY1 (0.71); YCR051W (0.699); ENV10 (0.698); ECM30 (0.693); TPO5 (0.692); SRD1 (0.575); IMG1 (0.573); SLY41 (0.572); PET18 (0.571); RRT12 (0.569); DAP1 (0.565); MRPL4 (0.565); YPK3 (0.564); YDR187C (0.563); ADP1 (0.562)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:120384-121103:- | gene-YCR007C_AKU4011 | rna-NM_001178720.1_AKU4011 | cds-NP_009933.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000178.1:24927-25646:+ | gene-YCR007C_BG1 | rna-NM_001178720.1_BG1 | cds-NP_009933.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:116198-116917:- | gene-YCR007C_Bruggeman | rna-NM_001178720.1_Bruggeman | cds-NP_009933.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:120718-121437:- | gene-YCR007C_CAT1 | rna-NM_001178720.1_CAT1 | cds-NP_009933.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:121033-121752:- | gene-YCR007C_CBS1585 | rna-NM_001178720.1_CBS1585 | cds-NP_009933.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:126294-127013:- | gene-YCR007C_CBS436 | rna-NM_001178720.1_CBS436 | cds-NP_009933.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:108493-109212:- | gene-YCR007C_CBS6412 | rna-NM_001178720.1_CBS6412 | cds-NP_009933.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:120340-121059:- | gene-YCR007C_CBS6413 | rna-NM_001178720.1_CBS6413 | cds-NP_009933.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:131492-132211:- | gene-YCR007C_CENPK1137D | rna-NM_001178720.1_CENPK1137D | cds-NP_009933.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:118402-119121:- | gene-YCR007C_EthanolRed | rna-NM_001178720.1_EthanolRed | cds-NP_009933.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:120700-121419:- | gene-YCR007C_FaliES1 | rna-NM_001178720.1_FaliES1 | cds-NP_009933.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000126.1:34874-35593:- | gene-YCR007C_JAY291 | rna-NM_001178720.1_JAY291 | cds-NP_009933.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:114001-114720:- | gene-YCR007C_MUCL30387 | rna-NM_001178720.1_MUCL30387 | cds-NP_009933.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:112972-113691:- | gene-YCR007C_MUCL30388 | rna-NM_001178720.1_MUCL30388 | cds-NP_009933.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:121450-122169:- | gene-YCR007C_MUCL39482 | rna-NM_001178720.1_MUCL39482 | cds-NP_009933.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:116690-117409:- | gene-YCR007C_MUCL42920 | rna-NM_001178720.1_MUCL42920 | cds-NP_009933.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:125643-126362:- | gene-YCR007C_NCIM3186 | rna-NM_001178720.1_NCIM3186 | cds-NP_009933.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:121933-122652:- | gene-YCR007C_NCYC1407 | rna-NM_001178720.1_NCYC1407 | cds-NP_009933.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:126105-126824:- | gene-YCR007C_PE2H3 | rna-NM_001178720.1_PE2H3 | cds-NP_009933.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:126070-126789:- | gene-YCR007C_PE2H4 | rna-NM_001178720.1_PE2H4 | cds-NP_009933.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:126011-126730:- | gene-YCR007C_S288C | rna-NM_001178720.1_S288C | cds-NP_009933.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000073.1:24938-25657:+ | gene-YCR007C_SA1 | rna-NM_001178720.1_SA1 | cds-NP_009933.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:121268-121987:- | gene-YCR007C_ThermosaccDry | rna-NM_001178720.1_ThermosaccDry | cds-NP_009933.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:131943-132662:- | gene-YCR007C_VR1 | rna-NM_001178720.1_VR1 | cds-NP_009933.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:120205-120924:- | gene-YCR007C_ZTW1 | rna-NM_001178720.1_ZTW1 | cds-NP_009933.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:151685-152404:- | gene-YCR007C_Sparadoxus | rna-NM_001178720.1_Sparadoxus | cds-NP_009933.1_Sparadoxus | 84.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |