Gene name: YCP4
Reference locus (S288C): YCR004C
Gene biotype: protein_coding
Description: Flavodoxin-like fold family protein; Flavoprotein-like protein YCP4; Protein of unknown function; has sequence and structural similarity to flavodoxins; predicted to be palmitoylated; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies
Top 10 interactors (score): PST2 (0.999); RFS1 (0.949); LOT6 (0.777); YCR099C (0.745); CWH43 (0.697); YCR1W (0.67); YML131W (0.645); YPR010C-A (0.638); YJR085C (0.634); AIM41 (0.596); SPI1 (0.571); LSP1 (0.57); CMR3 (0.553); MTO1 (0.539); AIM45 (0.524); NPP1 (0.52); PUT2 (0.501); PST1 (0.497); ACT1 (0.461); PEX34 (0.451)
Homologues (species, bitscore): AT4G27270 (Arabidopsis thaliana, 184.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:114284-115027:- | gene-YCR004C_AKU4011 | rna-NM_001178717.1_AKU4011 | cds-NP_009930.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000178.1:31003-31746:+ | gene-YCR004C_BG1 | rna-NM_001178717.1_BG1 | cds-NP_009930.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:110098-110841:- | gene-YCR004C_Bruggeman | rna-NM_001178717.1_Bruggeman | cds-NP_009930.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:114615-115358:- | gene-YCR004C_CAT1 | rna-NM_001178717.1_CAT1 | cds-NP_009930.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:114933-115676:- | gene-YCR004C_CBS1585 | rna-NM_001178717.1_CBS1585 | cds-NP_009930.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:119858-120601:- | gene-YCR004C_CBS436 | rna-NM_001178717.1_CBS436 | cds-NP_009930.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:102393-103136:- | gene-YCR004C_CBS6412 | rna-NM_001178717.1_CBS6412 | cds-NP_009930.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:114240-114983:- | gene-YCR004C_CBS6413 | rna-NM_001178717.1_CBS6413 | cds-NP_009930.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:119050-119793:- | gene-YCR004C_CENPK1137D | rna-NM_001178717.1_CENPK1137D | cds-NP_009930.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:112302-113045:- | gene-YCR004C_EthanolRed | rna-NM_001178717.1_EthanolRed | cds-NP_009930.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:114600-115343:- | gene-YCR004C_FaliES1 | rna-NM_001178717.1_FaliES1 | cds-NP_009930.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000126.1:28773-29516:- | gene-YCR004C_JAY291 | rna-NM_001178717.1_JAY291 | cds-NP_009930.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:107315-108058:- | gene-YCR004C_MUCL30387 | rna-NM_001178717.1_MUCL30387 | cds-NP_009930.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:106871-107614:- | gene-YCR004C_MUCL30388 | rna-NM_001178717.1_MUCL30388 | cds-NP_009930.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:115350-116093:- | gene-YCR004C_MUCL39482 | rna-NM_001178717.1_MUCL39482 | cds-NP_009930.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:110590-111333:- | gene-YCR004C_MUCL42920 | rna-NM_001178717.1_MUCL42920 | cds-NP_009930.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:119207-119950:- | gene-YCR004C_NCIM3186 | rna-NM_001178717.1_NCIM3186 | cds-NP_009930.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:115833-116576:- | gene-YCR004C_NCYC1407 | rna-NM_001178717.1_NCYC1407 | cds-NP_009930.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:120005-120748:- | gene-YCR004C_PE2H3 | rna-NM_001178717.1_PE2H3 | cds-NP_009930.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:119969-120712:- | gene-YCR004C_PE2H4 | rna-NM_001178717.1_PE2H4 | cds-NP_009930.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:119575-120318:- | gene-YCR004C_S288C | rna-NM_001178717.1_S288C | cds-NP_009930.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000073.1:31015-31758:+ | gene-YCR004C_SA1 | rna-NM_001178717.1_SA1 | cds-NP_009930.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:115168-115911:- | gene-YCR004C_ThermosaccDry | rna-NM_001178717.1_ThermosaccDry | cds-NP_009930.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:125840-126583:- | gene-YCR004C_VR1 | rna-NM_001178717.1_VR1 | cds-NP_009930.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:114104-114847:- | gene-YCR004C_ZTW1 | rna-NM_001178717.1_ZTW1 | cds-NP_009930.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:144974-145723:- | gene-YCR004C_Sparadoxus | rna-NM_001178717.1_Sparadoxus | cds-NP_009930.1_Sparadoxus | 91.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |