YCL020W (YCL020W)

Gene profile

Gene name: YCL020W
Reference locus (S288C): YCL020W
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): YAR009C (0.747); ATP20 (0.677); UBX6 (0.618); PUP2 (0.573); SCL1 (0.569); ATP7 (0.559); DIT1 (0.527); FAT1 (0.526); PRE6 (0.524); VMA10 (0.521); PRE4 (0.499); ECM4 (0.483); ATP14 (0.483); VMA8 (0.481); SBA1 (0.454); ADH6 (0.453); YGP1 (0.45); TAT1 (0.404)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
FaliES1 GCA_001738715.1 Bioethanol Asia MBWD01000030.1:313-1629:- gene-YCL020W_FaliES1 rna-NM_001178667.1_FaliES1 cds-NP_009910.2_FaliES1 99.7 100.0 Mismatch 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011812.1:84734-86050:+ gene-YCL020W_NCIM3186 rna-NM_001178667.1_NCIM3186 cds-NP_009910.2_NCIM3186 99.7 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994146.1:695712-697028:- gene-YCL020W_PE2H3 rna-NM_001178667.1_PE2H3 cds-NP_009910.2_PE2H3 98.1 100.0 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001135.5:85102-86418:+ gene-YCL020W_S288C rna-NM_001178667.1_S288C cds-NP_009910.2_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files