Gene name: YCL019W
Reference locus (S288C): YCL019W
Gene biotype: protein_coding
Description: Transposon Ty2-C Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): YDR261W-B (0.687)
Homologues (species, bitscore): ENSDARP00000105592 (Danio rerio, 52.4); CRK8 (Arabidopsis thaliana, 95.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | MBWD01000030.1:1-1629:- | gene-YCL019W_FaliES1 | rna-NM_001178666.2_FaliES1 | cds-NP_009909.2_FaliES1 | 30.5 | 30.6 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:84734-90047:+ | gene-YCL019W_NCIM3186 | rna-NM_001178666.2_NCIM3186 | cds-NP_009909.2_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:691715-697028:- | gene-YCL019W_PE2H3 | rna-NM_001178666.2_PE2H3 | cds-NP_009909.2_PE2H3 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:85102-90415:+ | gene-YCL019W_S288C | rna-NM_001178666.2_S288C | cds-NP_009909.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:947716-952243:+ | gene-YCL019W_Sparadoxus | rna-NM_001178666.2_Sparadoxus | cds-NP_009909.2_Sparadoxus | 55.3 | 76.7 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |