YCL019W (YCL019W)

Gene profile

Gene name: YCL019W
Reference locus (S288C): YCL019W
Gene biotype: protein_coding

Description: Transposon Ty2-C Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): YDR261W-B (0.687)

Homologues (species, bitscore): ENSDARP00000105592 (Danio rerio, 52.4); CRK8 (Arabidopsis thaliana, 95.9)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
FaliES1 GCA_001738715.1 Bioethanol Asia MBWD01000030.1:1-1629:- gene-YCL019W_FaliES1 rna-NM_001178666.2_FaliES1 cds-NP_009909.2_FaliES1 30.5 30.6 Mismatch 1 1 0 False False False True False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011812.1:84734-90047:+ gene-YCL019W_NCIM3186 rna-NM_001178666.2_NCIM3186 cds-NP_009909.2_NCIM3186 99.6 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994146.1:691715-697028:- gene-YCL019W_PE2H3 rna-NM_001178666.2_PE2H3 cds-NP_009909.2_PE2H3 98.9 100.0 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001135.5:85102-90415:+ gene-YCL019W_S288C rna-NM_001178666.2_S288C cds-NP_009909.2_S288C 100.0 100.0 Verified 1 1 1 True True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047490.1:947716-952243:+ gene-YCL019W_Sparadoxus rna-NM_001178666.2_Sparadoxus cds-NP_009909.2_Sparadoxus 55.3 76.7 Unannotated 1 1 0 False False False True False

Additional files