Gene name: YCL001W-B
Reference locus (S288C): YCL001W-B
Gene biotype: protein_coding
Description: Putative protein of unknown function; present in a region duplicated between chromosomes XIV and III; YCL001W-B has a paralog, DOM34, that arose from the whole genome duplication; Belongs to the eukaryotic release factor 1 family. Pelota subfamily. Highly divergent
Top 10 interactors (score): HBS1 (0.893); YCL001W-A (0.892); YCL068C (0.861); SUP35 (0.767); SKI7 (0.756); YCL049C (0.748); CTO1 (0.747); RLI1 (0.72); SRD1 (0.711); YCL042W (0.71); YCR024C-B (0.71); SOL2 (0.705); PER1 (0.694); FEN2 (0.691); SKI2 (0.648); TAF2 (0.619); OAC1 (0.525); BUD5 (0.499); YIL001W (0.493); SKI3 (0.489)
Homologues (species, bitscore): PELO (Homo sapiens, 55.8); Pelo (Mus musculus, 56.2); pelo (Danio rerio, 55.1); pelo (Xenopus tropicalis, 52.8); R74.6 (Caenorhabditis elegans, 62.8); AT3G58390 (Arabidopsis thaliana, 65.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:108480-108734:+ | gene-YCL001W-B_AKU4011 | rna-NM_001184462.1_AKU4011 | cds-NP_076878.1_AKU4011 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000178.1:37292-37546:- | gene-YCL001W-B_BG1 | rna-NM_001184462.1_BG1 | cds-NP_076878.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:103072-103326:+ | gene-YCL001W-B_Bruggeman | rna-NM_001184462.1_Bruggeman | cds-NP_076878.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:108222-108476:+ | gene-YCL001W-B_CAT1 | rna-NM_001184462.1_CAT1 | cds-NP_076878.1_CAT1 | 97.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:109130-109384:+ | gene-YCL001W-B_CBS1585 | rna-NM_001184462.1_CBS1585 | cds-NP_076878.1_CBS1585 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:114053-114307:+ | gene-YCL001W-B_CBS436 | rna-NM_001184462.1_CBS436 | cds-NP_076878.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:96589-96843:+ | gene-YCL001W-B_CBS6412 | rna-NM_001184462.1_CBS6412 | cds-NP_076878.1_CBS6412 | 97.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:108437-108691:+ | gene-YCL001W-B_CBS6413 | rna-NM_001184462.1_CBS6413 | cds-NP_076878.1_CBS6413 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:113245-113499:+ | gene-YCL001W-B_CENPK1137D | rna-NM_001184462.1_CENPK1137D | cds-NP_076878.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:106499-106753:+ | gene-YCL001W-B_EthanolRed | rna-NM_001184462.1_EthanolRed | cds-NP_076878.1_EthanolRed | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:108799-109053:+ | gene-YCL001W-B_FaliES1 | rna-NM_001184462.1_FaliES1 | cds-NP_076878.1_FaliES1 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000126.1:22967-23221:+ | gene-YCL001W-B_JAY291 | rna-NM_001184462.1_JAY291 | cds-NP_076878.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:101510-101764:+ | gene-YCL001W-B_MUCL30387 | rna-NM_001184462.1_MUCL30387 | cds-NP_076878.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:101066-101320:+ | gene-YCL001W-B_MUCL30388 | rna-NM_001184462.1_MUCL30388 | cds-NP_076878.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:109547-109801:+ | gene-YCL001W-B_MUCL39482 | rna-NM_001184462.1_MUCL39482 | cds-NP_076878.1_MUCL39482 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:104786-105040:+ | gene-YCL001W-B_MUCL42920 | rna-NM_001184462.1_MUCL42920 | cds-NP_076878.1_MUCL42920 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:113402-113656:+ | gene-YCL001W-B_NCIM3186 | rna-NM_001184462.1_NCIM3186 | cds-NP_076878.1_NCIM3186 | 97.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:110029-110283:+ | gene-YCL001W-B_NCYC1407 | rna-NM_001184462.1_NCYC1407 | cds-NP_076878.1_NCYC1407 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:114205-114459:+ | gene-YCL001W-B_PE2H3 | rna-NM_001184462.1_PE2H3 | cds-NP_076878.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:114163-114417:+ | gene-YCL001W-B_PE2H4 | rna-NM_001184462.1_PE2H4 | cds-NP_076878.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:113770-114024:+ | gene-YCL001W-B_S288C | rna-NM_001184462.1_S288C | cds-NP_076878.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000073.1:37310-37564:- | gene-YCL001W-B_SA1 | rna-NM_001184462.1_SA1 | cds-NP_076878.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:109365-109619:+ | gene-YCL001W-B_ThermosaccDry | rna-NM_001184462.1_ThermosaccDry | cds-NP_076878.1_ThermosaccDry | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:120012-120266:+ | gene-YCL001W-B_VR1 | rna-NM_001184462.1_VR1 | cds-NP_076878.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:108310-108564:+ | gene-YCL001W-B_ZTW1 | rna-NM_001184462.1_ZTW1 | cds-NP_076878.1_ZTW1 | 97.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |