Gene name: YCK3
Reference locus (S288C): YER123W
Gene biotype: protein_coding
Description: Casein kinase I homolog 3; Palmitoylated vacuolar membrane-localized casein kinase I isoform; negatively regulates vacuole fusion during hypertonic stress via phosphorylation of Vps41p; shares essential functions with Hrr25p; regulates vesicle fusion in AP-3 pathway
Top 10 interactors (score): VPS41 (0.964); ENV7 (0.914); YPT7 (0.874); GYP7 (0.845); VAM6 (0.827); VAM3 (0.813); MON1 (0.789); NYV1 (0.753); GYP1 (0.75); SEC17 (0.748); VAM7 (0.746); VAC8 (0.737); VPS33 (0.723); SEC18 (0.72); VPS3 (0.705); YPL199C (0.698); APL5 (0.697); PEP5 (0.696); PHO8 (0.68); GDI1 (0.624)
Homologues (species, bitscore): CSNK1G3 (Homo sapiens, 309.7); Csnk1g3 (Mus musculus, 313.2); csnk1g1 (Danio rerio, 310.8); csnk1g3 (Xenopus tropicalis, 313.9); gish (Drosophila melanogaster, 299.3); csnk-1 (Caenorhabditis elegans, 301.2); ckl8 (Arabidopsis thaliana, 297.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:398690-400264:+ | gene-YER123W_AKU4011 | rna-NM_001179013.1_AKU4011 | cds-NP_011049.2_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:25338-26907:- | gene-YER123W_BG1 | rna-NM_001179013.1_BG1 | cds-NP_011049.2_BG1 | 99.0 | 99.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:409158-410732:+ | gene-YER123W_Bruggeman | rna-NM_001179013.1_Bruggeman | cds-NP_011049.2_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:404401-405975:+ | gene-YER123W_CAT1 | rna-NM_001179013.1_CAT1 | cds-NP_011049.2_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:398085-399659:+ | gene-YER123W_CBS1585 | rna-NM_001179013.1_CBS1585 | cds-NP_011049.2_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:400790-402364:+ | gene-YER123W_CBS436 | rna-NM_001179013.1_CBS436 | cds-NP_011049.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:397163-398737:+ | gene-YER123W_CBS6412 | rna-NM_001179013.1_CBS6412 | cds-NP_011049.2_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:404006-405580:+ | gene-YER123W_CBS6413 | rna-NM_001179013.1_CBS6413 | cds-NP_011049.2_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:402579-404153:+ | gene-YER123W_CENPK1137D | rna-NM_001179013.1_CENPK1137D | cds-NP_011049.2_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:398539-400113:+ | gene-YER123W_EthanolRed | rna-NM_001179013.1_EthanolRed | cds-NP_011049.2_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:399020-400594:+ | gene-YER123W_FaliES1 | rna-NM_001179013.1_FaliES1 | cds-NP_011049.2_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000028.1:7238-8812:+ | gene-YER123W_JAY291 | rna-NM_001179013.1_JAY291 | cds-NP_011049.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:406107-407681:+ | gene-YER123W_MUCL30387 | rna-NM_001179013.1_MUCL30387 | cds-NP_011049.2_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:401053-402627:+ | gene-YER123W_MUCL30388 | rna-NM_001179013.1_MUCL30388 | cds-NP_011049.2_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:397110-398684:+ | gene-YER123W_MUCL39482 | rna-NM_001179013.1_MUCL39482 | cds-NP_011049.2_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:405598-407172:+ | gene-YER123W_MUCL42920 | rna-NM_001179013.1_MUCL42920 | cds-NP_011049.2_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:404812-406386:+ | gene-YER123W_NCIM3186 | rna-NM_001179013.1_NCIM3186 | cds-NP_011049.2_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:402642-404216:+ | gene-YER123W_NCYC1407 | rna-NM_001179013.1_NCYC1407 | cds-NP_011049.2_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:413187-414761:+ | gene-YER123W_PE2H3 | rna-NM_001179013.1_PE2H3 | cds-NP_011049.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:403128-404702:+ | gene-YER123W_PE2H4 | rna-NM_001179013.1_PE2H4 | cds-NP_011049.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:404813-406387:+ | gene-YER123W_S288C | rna-NM_001179013.1_S288C | cds-NP_011049.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:114419-115993:+ | gene-YER123W_SA1 | rna-NM_001179013.1_SA1 | cds-NP_011049.2_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:399818-401392:+ | gene-YER123W_ThermosaccDry | rna-NM_001179013.1_ThermosaccDry | cds-NP_011049.2_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:400871-402445:+ | gene-YER123W_VR1 | rna-NM_001179013.1_VR1 | cds-NP_011049.2_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:396949-398523:+ | gene-YER123W_ZTW1 | rna-NM_001179013.1_ZTW1 | cds-NP_011049.2_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:400867-402444:+ | gene-YER123W_Sparadoxus | rna-NM_001179013.1_Sparadoxus | cds-NP_011049.2_Sparadoxus | 92.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |