Gene name: YCG1
Reference locus (S288C): YDR325W
Gene biotype: protein_coding
Description: Subunit of the condensin complex; required for establishment and maintenance of chromosome condensation, chromosome segregation and chromatin binding by the complex; required for tRNA genes clustering at the nucleolus; required for replication slow zone breakage following Mec1p inactivation; transcription is cell cycle regulated, peaking in mitosis and declining in G1; protein is constitutively degraded by the proteasome; rate limiting for condensin recruitment to chromatin
Top 10 interactors (score): YCS4 (0.999); BRN1 (0.999); SMC2 (0.999); SMC4 (0.999); PDS5 (0.99); ESP1 (0.985); SMC3 (0.984); TOP2 (0.983); NDC80 (0.976); IPL1 (0.972); SMC1 (0.97); MAD2 (0.969); MCD1 (0.954); MCM3 (0.949); CIN8 (0.948); SMC5 (0.945); MCM4 (0.943); ASE1 (0.918); MPS1 (0.917); POL1 (0.917)
Homologues (species, bitscore): NCAPG (Homo sapiens, 163.7); Ncapg (Mus musculus, 158.7); ncapg (Danio rerio, 150.6); ncapg (Xenopus tropicalis, 150.2); Cap-G (Drosophila melanogaster, 77.4); EMB2656 (Arabidopsis thaliana, 84.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1063152-1066259:+ | gene-YDR325W_AKU4011 | rna-NM_001180633.1_AKU4011 | cds-NP_010612.2_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:65287-68394:- | gene-YDR325W_BG1 | rna-NM_001180633.1_BG1 | cds-NP_010612.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1090695-1093802:+ | gene-YDR325W_Bruggeman | rna-NM_001180633.1_Bruggeman | cds-NP_010612.2_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1077453-1080560:+ | gene-YDR325W_CAT1 | rna-NM_001180633.1_CAT1 | cds-NP_010612.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1057596-1060703:+ | gene-YDR325W_CBS1585 | rna-NM_001180633.1_CBS1585 | cds-NP_010612.2_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1075993-1079100:+ | gene-YDR325W_CBS436 | rna-NM_001180633.1_CBS436 | cds-NP_010612.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1054284-1057391:+ | gene-YDR325W_CBS6412 | rna-NM_001180633.1_CBS6412 | cds-NP_010612.2_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1075515-1078622:+ | gene-YDR325W_CBS6413 | rna-NM_001180633.1_CBS6413 | cds-NP_010612.2_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1115764-1118871:+ | gene-YDR325W_CENPK1137D | rna-NM_001180633.1_CENPK1137D | cds-NP_010612.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:238694-241801:+ | gene-YDR325W_EthanolRed | rna-NM_001180633.1_EthanolRed | cds-NP_010612.2_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1069909-1073016:+ | gene-YDR325W_FaliES1 | rna-NM_001180633.1_FaliES1 | cds-NP_010612.2_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000386.1:22433-25540:+ | gene-YDR325W_JAY291 | rna-NM_001180633.1_JAY291 | cds-NP_010612.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1075954-1079061:+ | gene-YDR325W_MUCL30387 | rna-NM_001180633.1_MUCL30387 | cds-NP_010612.2_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1064891-1067998:+ | gene-YDR325W_MUCL30388 | rna-NM_001180633.1_MUCL30388 | cds-NP_010612.2_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1049403-1052510:+ | gene-YDR325W_MUCL39482 | rna-NM_001180633.1_MUCL39482 | cds-NP_010612.2_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:996485-999592:+ | gene-YDR325W_MUCL42920 | rna-NM_001180633.1_MUCL42920 | cds-NP_010612.2_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1117049-1120156:+ | gene-YDR325W_NCIM3186 | rna-NM_001180633.1_NCIM3186 | cds-NP_010612.2_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1062694-1065801:+ | gene-YDR325W_NCYC1407 | rna-NM_001180633.1_NCYC1407 | cds-NP_010612.2_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1073711-1076818:+ | gene-YDR325W_PE2H3 | rna-NM_001180633.1_PE2H3 | cds-NP_010612.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1079296-1082403:+ | gene-YDR325W_PE2H4 | rna-NM_001180633.1_PE2H4 | cds-NP_010612.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1117126-1120233:+ | gene-YDR325W_S288C | rna-NM_001180633.1_S288C | cds-NP_010612.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:87939-91046:+ | gene-YDR325W_SA1 | rna-NM_001180633.1_SA1 | cds-NP_010612.2_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1074182-1077289:+ | gene-YDR325W_ThermosaccDry | rna-NM_001180633.1_ThermosaccDry | cds-NP_010612.2_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1090110-1093217:+ | gene-YDR325W_VR1 | rna-NM_001180633.1_VR1 | cds-NP_010612.2_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:118291-121399:+ | gene-YDR325W_ZTW1 | rna-NM_001180633.1_ZTW1 | cds-NP_010612.2_ZTW1 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1069616-1072717:+ | gene-YDR325W_Sparadoxus | rna-NM_001180633.1_Sparadoxus | cds-NP_010612.2_Sparadoxus | 88.7 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |