Gene name: YBR242W
Reference locus (S288C): YBR242W
Gene biotype: protein_coding
Description: HD domain-containing protein YBR242W; Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YBR242W is not an essential gene; YBR242W has a paralog, YGL101W, that arose from the whole genome duplication
Top 10 interactors (score): GLN1 (0.747); URA1 (0.691); ADK1 (0.579); SOG2 (0.577); ACF2 (0.569); HYM1 (0.566); TAO3 (0.5); CPR2 (0.46); ADK2 (0.439)
Homologues (species, bitscore): HDDC2 (Homo sapiens, 148.7); Hddc2 (Mus musculus, 144.4); hddc2 (Danio rerio, 136.0); hddc2 (Xenopus tropicalis, 142.5); CG11050 (Drosophila melanogaster, 127.1); F45F2.9 (Caenorhabditis elegans, 94.0); AT1G26160 (Arabidopsis thaliana, 152.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:688981-689697:+ | gene-YBR242W_AKU4011 | rna-NM_001178590.1_AKU4011 | cds-NP_009801.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:59988-60704:+ | gene-YBR242W_BG1 | rna-NM_001178590.1_BG1 | cds-NP_009801.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:690122-690838:+ | gene-YBR242W_Bruggeman | rna-NM_001178590.1_Bruggeman | cds-NP_009801.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:693611-694327:+ | gene-YBR242W_CAT1 | rna-NM_001178590.1_CAT1 | cds-NP_009801.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:680547-681263:+ | gene-YBR242W_CBS1585 | rna-NM_001178590.1_CBS1585 | cds-NP_009801.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:686966-687682:+ | gene-YBR242W_CBS436 | rna-NM_001178590.1_CBS436 | cds-NP_009801.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:775152-775868:+ | gene-YBR242W_CBS6412 | rna-NM_001178590.1_CBS6412 | cds-NP_009801.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:686596-687312:+ | gene-YBR242W_CBS6413 | rna-NM_001178590.1_CBS6413 | cds-NP_009801.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:698583-699299:+ | gene-YBR242W_CENPK1137D | rna-NM_001178590.1_CENPK1137D | cds-NP_009801.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:812004-812720:+ | gene-YBR242W_EthanolRed | rna-NM_001178590.1_EthanolRed | cds-NP_009801.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:705351-706067:+ | gene-YBR242W_FaliES1 | rna-NM_001178590.1_FaliES1 | cds-NP_009801.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:97997-98713:- | gene-YBR242W_JAY291 | rna-NM_001178590.1_JAY291 | cds-NP_009801.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:692165-692881:+ | gene-YBR242W_MUCL30387 | rna-NM_001178590.1_MUCL30387 | cds-NP_009801.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:709248-709964:+ | gene-YBR242W_MUCL30388 | rna-NM_001178590.1_MUCL30388 | cds-NP_009801.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:678854-679570:+ | gene-YBR242W_MUCL39482 | rna-NM_001178590.1_MUCL39482 | cds-NP_009801.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:688700-689416:+ | gene-YBR242W_MUCL42920 | rna-NM_001178590.1_MUCL42920 | cds-NP_009801.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:704467-705183:+ | gene-YBR242W_NCIM3186 | rna-NM_001178590.1_NCIM3186 | cds-NP_009801.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:680743-681459:+ | gene-YBR242W_NCYC1407 | rna-NM_001178590.1_NCYC1407 | cds-NP_009801.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:703849-704565:+ | gene-YBR242W_PE2H3 | rna-NM_001178590.1_PE2H3 | cds-NP_009801.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:701525-702241:+ | gene-YBR242W_PE2H4 | rna-NM_001178590.1_PE2H4 | cds-NP_009801.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:704670-705386:+ | gene-YBR242W_S288C | rna-NM_001178590.1_S288C | cds-NP_009801.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:59810-60526:+ | gene-YBR242W_SA1 | rna-NM_001178590.1_SA1 | cds-NP_009801.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:704343-705059:+ | gene-YBR242W_ThermosaccDry | rna-NM_001178590.1_ThermosaccDry | cds-NP_009801.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:684559-685275:+ | gene-YBR242W_VR1 | rna-NM_001178590.1_VR1 | cds-NP_009801.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:677202-677918:+ | gene-YBR242W_ZTW1 | rna-NM_001178590.1_ZTW1 | cds-NP_009801.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:721163-721879:+ | gene-YBR242W_Sparadoxus | rna-NM_001178590.1_Sparadoxus | cds-NP_009801.1_Sparadoxus | 90.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |