Gene name: YBR238C
Reference locus (S288C): YBR238C
Gene biotype: protein_coding
Description: Mitochondrial membrane protein; not required for respiratory growth but causes a synthetic respiratory defect in combination with rmd9 mutations; transcriptionally up-regulated by TOR; deletion increases life span; YBR238C has a paralog, RMD9, that arose from the whole genome duplication
Top 10 interactors (score): PRM7 (0.777); BOI1 (0.708); MRN1 (0.692); HEK2 (0.686); ECM32 (0.659); RQC2 (0.611); GIS2 (0.574); RPL31A (0.564); NIP1 (0.552); TOD6 (0.547); BSC1 (0.545); DBP2 (0.543); GFA1 (0.493); BRE5 (0.487); PUB1 (0.483); OXA1 (0.482); VTS1 (0.471); KSP1 (0.471); UTP5 (0.465); YME1 (0.453)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:679416-681611:- | gene-YBR238C_AKU4011 | rna-NM_001178586.1_AKU4011 | cds-NP_009797.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:50381-52576:- | gene-YBR238C_BG1 | rna-NM_001178586.1_BG1 | cds-NP_009797.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:680571-682766:- | gene-YBR238C_Bruggeman | rna-NM_001178586.1_Bruggeman | cds-NP_009797.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:684026-686221:- | gene-YBR238C_CAT1 | rna-NM_001178586.1_CAT1 | cds-NP_009797.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:670948-673143:- | gene-YBR238C_CBS1585 | rna-NM_001178586.1_CBS1585 | cds-NP_009797.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:677373-679568:- | gene-YBR238C_CBS436 | rna-NM_001178586.1_CBS436 | cds-NP_009797.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:765928-768123:- | gene-YBR238C_CBS6412 | rna-NM_001178586.1_CBS6412 | cds-NP_009797.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:676991-679186:- | gene-YBR238C_CBS6413 | rna-NM_001178586.1_CBS6413 | cds-NP_009797.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:688884-691079:- | gene-YBR238C_CENPK1137D | rna-NM_001178586.1_CENPK1137D | cds-NP_009797.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:802658-804853:- | gene-YBR238C_EthanolRed | rna-NM_001178586.1_EthanolRed | cds-NP_009797.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:695765-697960:- | gene-YBR238C_FaliES1 | rna-NM_001178586.1_FaliES1 | cds-NP_009797.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:104391-106586:+ | gene-YBR238C_JAY291 | rna-NM_001178586.1_JAY291 | cds-NP_009797.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:682587-684782:- | gene-YBR238C_MUCL30387 | rna-NM_001178586.1_MUCL30387 | cds-NP_009797.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:699666-701861:- | gene-YBR238C_MUCL30388 | rna-NM_001178586.1_MUCL30388 | cds-NP_009797.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:669300-671495:- | gene-YBR238C_MUCL39482 | rna-NM_001178586.1_MUCL39482 | cds-NP_009797.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:679149-681344:- | gene-YBR238C_MUCL42920 | rna-NM_001178586.1_MUCL42920 | cds-NP_009797.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:694904-697099:- | gene-YBR238C_NCIM3186 | rna-NM_001178586.1_NCIM3186 | cds-NP_009797.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:671163-673358:- | gene-YBR238C_NCYC1407 | rna-NM_001178586.1_NCYC1407 | cds-NP_009797.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:694279-696474:- | gene-YBR238C_PE2H3 | rna-NM_001178586.1_PE2H3 | cds-NP_009797.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:691955-694150:- | gene-YBR238C_PE2H4 | rna-NM_001178586.1_PE2H4 | cds-NP_009797.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:695107-697302:- | gene-YBR238C_S288C | rna-NM_001178586.1_S288C | cds-NP_009797.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:50236-52431:- | gene-YBR238C_SA1 | rna-NM_001178586.1_SA1 | cds-NP_009797.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:694775-696970:- | gene-YBR238C_ThermosaccDry | rna-NM_001178586.1_ThermosaccDry | cds-NP_009797.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:674953-677148:- | gene-YBR238C_VR1 | rna-NM_001178586.1_VR1 | cds-NP_009797.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:667637-669832:- | gene-YBR238C_ZTW1 | rna-NM_001178586.1_ZTW1 | cds-NP_009797.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:711627-713822:- | gene-YBR238C_Sparadoxus | rna-NM_001178586.1_Sparadoxus | cds-NP_009797.1_Sparadoxus | 92.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |