Gene name: YBR220C
Reference locus (S288C): YBR220C
Gene biotype: protein_coding
Description: Uncharacterized membrane protein ybr220c; Putative protein of unknown function; YBR220C is not an essential gene
Top 10 interactors (score): KAR2 (0.911); SEC62 (0.863); SEC61 (0.764); PDI1 (0.746); LHS1 (0.736); EUG1 (0.704); SEC63 (0.702); ERP3 (0.701); WBP1 (0.696); STE24 (0.66); CNE1 (0.656); ERV29 (0.656); SEC23 (0.655); KEX2 (0.649); SFB3 (0.645); PHS1 (0.644); ERD2 (0.643); YOS9 (0.643); MPD1 (0.635); HRD1 (0.625)
Homologues (species, bitscore): SLC33A1 (Homo sapiens, 276.2); Slc33a1 (Mus musculus, 274.6); slc33a1 (Danio rerio, 270.8); slc33a1 (Xenopus tropicalis, 286.6); CG9706 (Drosophila melanogaster, 274.6); T26C5.3 (Caenorhabditis elegans, 272.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:647301-648983:- | gene-YBR220C_AKU4011 | rna-NM_001178568.3_AKU4011 | cds-NP_009779.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:18222-19904:- | gene-YBR220C_BG1 | rna-NM_001178568.3_BG1 | cds-NP_009779.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:648456-650138:- | gene-YBR220C_Bruggeman | rna-NM_001178568.3_Bruggeman | cds-NP_009779.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:651661-653343:- | gene-YBR220C_CAT1 | rna-NM_001178568.3_CAT1 | cds-NP_009779.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:638833-640515:- | gene-YBR220C_CBS1585 | rna-NM_001178568.3_CBS1585 | cds-NP_009779.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:645258-646940:- | gene-YBR220C_CBS436 | rna-NM_001178568.3_CBS436 | cds-NP_009779.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:733810-735492:- | gene-YBR220C_CBS6412 | rna-NM_001178568.3_CBS6412 | cds-NP_009779.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:644871-646553:- | gene-YBR220C_CBS6413 | rna-NM_001178568.3_CBS6413 | cds-NP_009779.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:656775-658457:- | gene-YBR220C_CENPK1137D | rna-NM_001178568.3_CENPK1137D | cds-NP_009779.3_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:770546-772228:- | gene-YBR220C_EthanolRed | rna-NM_001178568.3_EthanolRed | cds-NP_009779.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:663653-665335:- | gene-YBR220C_FaliES1 | rna-NM_001178568.3_FaliES1 | cds-NP_009779.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:137020-138702:+ | gene-YBR220C_JAY291 | rna-NM_001178568.3_JAY291 | cds-NP_009779.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:650469-652151:- | gene-YBR220C_MUCL30387 | rna-NM_001178568.3_MUCL30387 | cds-NP_009779.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:667549-669231:- | gene-YBR220C_MUCL30388 | rna-NM_001178568.3_MUCL30388 | cds-NP_009779.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:637185-638867:- | gene-YBR220C_MUCL39482 | rna-NM_001178568.3_MUCL39482 | cds-NP_009779.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:647028-648710:- | gene-YBR220C_MUCL42920 | rna-NM_001178568.3_MUCL42920 | cds-NP_009779.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:662792-664474:- | gene-YBR220C_NCIM3186 | rna-NM_001178568.3_NCIM3186 | cds-NP_009779.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:639047-640729:- | gene-YBR220C_NCYC1407 | rna-NM_001178568.3_NCYC1407 | cds-NP_009779.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:662163-663845:- | gene-YBR220C_PE2H3 | rna-NM_001178568.3_PE2H3 | cds-NP_009779.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:659839-661521:- | gene-YBR220C_PE2H4 | rna-NM_001178568.3_PE2H4 | cds-NP_009779.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:662995-664677:- | gene-YBR220C_S288C | rna-NM_001178568.3_S288C | cds-NP_009779.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:18120-19802:- | gene-YBR220C_SA1 | rna-NM_001178568.3_SA1 | cds-NP_009779.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:662663-664345:- | gene-YBR220C_ThermosaccDry | rna-NM_001178568.3_ThermosaccDry | cds-NP_009779.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:642836-644518:- | gene-YBR220C_VR1 | rna-NM_001178568.3_VR1 | cds-NP_009779.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:635528-637210:- | gene-YBR220C_ZTW1 | rna-NM_001178568.3_ZTW1 | cds-NP_009779.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:679499-681181:- | gene-YBR220C_Sparadoxus | rna-NM_001178568.3_Sparadoxus | cds-NP_009779.3_Sparadoxus | 90.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |