Gene name: YBR062C
Reference locus (S288C): YBR062C
Gene biotype: protein_coding
Description: Uncharacterized RING finger protein YBR062C; Protein of unknown function that interacts with Msb2p; may play a role in activation of the filamentous growth pathway
Top 10 interactors (score): TOM1 (0.819); GCG1 (0.78); HUL5 (0.779); HUL4 (0.772); MAG2 (0.77); KEX2 (0.761); YMR075C-A (0.746); YKR073C (0.746); ETP1 (0.744); TMC1 (0.739); SSM4 (0.727); UFD4 (0.7); IRC20 (0.696); ASR1 (0.694); WWM1 (0.69); RKR1 (0.674); DMA2 (0.669); PEX10 (0.666); RTC1 (0.652); MTC5 (0.641)
Homologues (species, bitscore): PJA2 (Homo sapiens, 54.3); Pja2 (Mus musculus, 54.3); pja2 (Xenopus tropicalis, 53.5); AT4G35840 (Arabidopsis thaliana, 60.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:348393-349017:- | gene-YBR062C_AKU4011 | rna-NM_001178410.1_AKU4011 | cds-NP_009618.2_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:338650-339274:- | gene-YBR062C_BG1 | rna-NM_001178410.1_BG1 | cds-NP_009618.2_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:349384-350008:- | gene-YBR062C_Bruggeman | rna-NM_001178410.1_Bruggeman | cds-NP_009618.2_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:352896-353520:- | gene-YBR062C_CAT1 | rna-NM_001178410.1_CAT1 | cds-NP_009618.2_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:340674-341298:- | gene-YBR062C_CBS1585 | rna-NM_001178410.1_CBS1585 | cds-NP_009618.2_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:348751-349375:- | gene-YBR062C_CBS436 | rna-NM_001178410.1_CBS436 | cds-NP_009618.2_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:438892-439516:- | gene-YBR062C_CBS6412 | rna-NM_001178410.1_CBS6412 | cds-NP_009618.2_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:345798-346422:- | gene-YBR062C_CBS6413 | rna-NM_001178410.1_CBS6413 | cds-NP_009618.2_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:359738-360362:- | gene-YBR062C_CENPK1137D | rna-NM_001178410.1_CENPK1137D | cds-NP_009618.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:475161-475785:- | gene-YBR062C_EthanolRed | rna-NM_001178410.1_EthanolRed | cds-NP_009618.2_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:364439-365063:- | gene-YBR062C_FaliES1 | rna-NM_001178410.1_FaliES1 | cds-NP_009618.2_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000124.1:12376-13000:- | gene-YBR062C_JAY291 | rna-NM_001178410.1_JAY291 | cds-NP_009618.2_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:350749-351373:- | gene-YBR062C_MUCL30387 | rna-NM_001178410.1_MUCL30387 | cds-NP_009618.2_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:350764-351388:- | gene-YBR062C_MUCL30388 | rna-NM_001178410.1_MUCL30388 | cds-NP_009618.2_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:340662-341286:- | gene-YBR062C_MUCL39482 | rna-NM_001178410.1_MUCL39482 | cds-NP_009618.2_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:347883-348507:- | gene-YBR062C_MUCL42920 | rna-NM_001178410.1_MUCL42920 | cds-NP_009618.2_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:365773-366397:- | gene-YBR062C_NCIM3186 | rna-NM_001178410.1_NCIM3186 | cds-NP_009618.2_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:341580-342204:- | gene-YBR062C_NCYC1407 | rna-NM_001178410.1_NCYC1407 | cds-NP_009618.2_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:353825-354449:- | gene-YBR062C_PE2H3 | rna-NM_001178410.1_PE2H3 | cds-NP_009618.2_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:351501-352125:- | gene-YBR062C_PE2H4 | rna-NM_001178410.1_PE2H4 | cds-NP_009618.2_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:365976-366600:- | gene-YBR062C_S288C | rna-NM_001178410.1_S288C | cds-NP_009618.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:110899-111523:+ | gene-YBR062C_SA1 | rna-NM_001178410.1_SA1 | cds-NP_009618.2_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:363450-364074:- | gene-YBR062C_ThermosaccDry | rna-NM_001178410.1_ThermosaccDry | cds-NP_009618.2_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:345443-346067:- | gene-YBR062C_VR1 | rna-NM_001178410.1_VR1 | cds-NP_009618.2_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:339137-339761:- | gene-YBR062C_ZTW1 | rna-NM_001178410.1_ZTW1 | cds-NP_009618.2_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:376201-376828:- | gene-YBR062C_Sparadoxus | rna-NM_001178410.1_Sparadoxus | cds-NP_009618.2_Sparadoxus | 90.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |