YBR012W-B (YBR012W-B)

Gene profile

Gene name: YBR012W-B
Reference locus (S288C): YBR012W-B
Gene biotype: protein_coding

Description: Transposon Ty1-BR Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): DAN4 (0.771); FLO9 (0.487); YBL113C (0.45)

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 90.9)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000146.1:1-728:+ gene-YBR012W-B_Bruggeman rna-NM_001180056.2_Bruggeman cds-NP_009567.1_Bruggeman 13.7 13.8 Mismatch 1 1 0 False False True False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011822.1:184415-189683:+ gene-YBR012W-B_NCIM3186 rna-NM_001180056.2_NCIM3186 cds-NP_009567.1_NCIM3186 92.7 99.9 Mismatch 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994154.1:276937-282584:- gene-YBR012W-B_PE2H3 rna-NM_001180056.2_PE2H3 cds-NP_009567.1_PE2H3 92.7 99.9 Unannotated 1 1 0 False False False True False
S288C GCF_000146045.2 Laboratory Not applicable NC_001134.8:259869-265140:+ gene-YBR012W-B_S288C rna-NM_001180056.2_S288C cds-NP_009567.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005467.1:359164-359639:- gene-YBR012W-B_VR1 rna-NM_001180056.2_VR1 cds-NP_009567.1_VR1 9.0 9.0 Mismatch 1 1 0 False False False True False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047491.1:431192-436460:- gene-YBR012W-B_Sparadoxus rna-NM_001180056.2_Sparadoxus cds-NP_009567.1_Sparadoxus 91.3 99.7 Mismatch 1 1 1 False True False False False

Additional files