Gene name: YBR012W-B
Reference locus (S288C): YBR012W-B
Gene biotype: protein_coding
Description: Transposon Ty1-BR Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): DAN4 (0.771); FLO9 (0.487); YBL113C (0.45)
Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 90.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000146.1:1-728:+ | gene-YBR012W-B_Bruggeman | rna-NM_001180056.2_Bruggeman | cds-NP_009567.1_Bruggeman | 13.7 | 13.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:184415-189683:+ | gene-YBR012W-B_NCIM3186 | rna-NM_001180056.2_NCIM3186 | cds-NP_009567.1_NCIM3186 | 92.7 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:276937-282584:- | gene-YBR012W-B_PE2H3 | rna-NM_001180056.2_PE2H3 | cds-NP_009567.1_PE2H3 | 92.7 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:259869-265140:+ | gene-YBR012W-B_S288C | rna-NM_001180056.2_S288C | cds-NP_009567.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:359164-359639:- | gene-YBR012W-B_VR1 | rna-NM_001180056.2_VR1 | cds-NP_009567.1_VR1 | 9.0 | 9.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:431192-436460:- | gene-YBR012W-B_Sparadoxus | rna-NM_001180056.2_Sparadoxus | cds-NP_009567.1_Sparadoxus | 91.3 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |