YBR012W-A (YBR012W-A)

Gene profile

Gene name: YBR012W-A
Reference locus (S288C): YBR012W-A
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011822.1:184415-185737:+ gene-YBR012W-A_NCIM3186 rna-NM_001180055.1_NCIM3186 cds-NP_009568.1_NCIM3186 99.7 100.0 Mismatch 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994154.1:280883-282584:- gene-YBR012W-A_PE2H3 rna-NM_001180055.1_PE2H3 cds-NP_009568.1_PE2H3 77.4 100.0 Unannotated 1 1 0 False False False True False
S288C GCF_000146045.2 Laboratory Not applicable NC_001134.8:259869-261191:+ gene-YBR012W-A_S288C rna-NM_001180055.1_S288C cds-NP_009568.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005467.1:359164-359639:- gene-YBR012W-A_VR1 rna-NM_001180055.1_VR1 cds-NP_009568.1_VR1 35.9 35.9 Verified 1 1 0 False False False True False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047491.1:435138-436460:- gene-YBR012W-A_Sparadoxus rna-NM_001180055.1_Sparadoxus cds-NP_009568.1_Sparadoxus 97.7 99.7 Mismatch 1 1 1 False True False False False

Additional files