Gene name: YBR012W-A
Reference locus (S288C): YBR012W-A
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): Unknown
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:184415-185737:+ | gene-YBR012W-A_NCIM3186 | rna-NM_001180055.1_NCIM3186 | cds-NP_009568.1_NCIM3186 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:280883-282584:- | gene-YBR012W-A_PE2H3 | rna-NM_001180055.1_PE2H3 | cds-NP_009568.1_PE2H3 | 77.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:259869-261191:+ | gene-YBR012W-A_S288C | rna-NM_001180055.1_S288C | cds-NP_009568.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:359164-359639:- | gene-YBR012W-A_VR1 | rna-NM_001180055.1_VR1 | cds-NP_009568.1_VR1 | 35.9 | 35.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:435138-436460:- | gene-YBR012W-A_Sparadoxus | rna-NM_001180055.1_Sparadoxus | cds-NP_009568.1_Sparadoxus | 97.7 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |