Gene name: YBP2
Reference locus (S288C): YGL060W
Gene biotype: protein_coding
Description: YAP1-binding protein 2; Central kinetochore associated protein; mediates mitotic progression; interacts with several central kinetochore proteins and centromeric histone Cse4p; role in resistance to oxidative stress; similar to Slk19p; YBP2 has a paralog, YBP1, that arose from the whole genome duplication
Top 10 interactors (score): CSE4 (0.97); HHT2 (0.932); HHT1 (0.932); SPC105 (0.82); DUO1 (0.785); NUF2 (0.76); J1120 (0.694); SPC25 (0.693); MAD2 (0.68); AIM4 (0.679); RVS167 (0.662); CHL4 (0.66); MCM16 (0.641); CTF3 (0.635); NSL1 (0.634); MCM22 (0.63); CTF19 (0.612); AME1 (0.609); OKP1 (0.608); YAP1 (0.591)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:393056-394981:+ | gene-YGL060W_AKU4011 | rna-NM_001180925.1_AKU4011 | cds-NP_011455.1_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:10411-12336:- | gene-YGL060W_BG1 | rna-NM_001180925.1_BG1 | cds-NP_011455.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:395533-397458:+ | gene-YGL060W_Bruggeman | rna-NM_001180925.1_Bruggeman | cds-NP_011455.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:392530-394455:+ | gene-YGL060W_CAT1 | rna-NM_001180925.1_CAT1 | cds-NP_011455.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:396601-398526:+ | gene-YGL060W_CBS1585 | rna-NM_001180925.1_CBS1585 | cds-NP_011455.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:390739-392664:+ | gene-YGL060W_CBS436 | rna-NM_001180925.1_CBS436 | cds-NP_011455.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:380760-382685:+ | gene-YGL060W_CBS6412 | rna-NM_001180925.1_CBS6412 | cds-NP_011455.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:390686-392611:+ | gene-YGL060W_CBS6413 | rna-NM_001180925.1_CBS6413 | cds-NP_011455.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:390252-392177:+ | gene-YGL060W_CENPK1137D | rna-NM_001180925.1_CENPK1137D | cds-NP_011455.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:382126-384051:+ | gene-YGL060W_EthanolRed | rna-NM_001180925.1_EthanolRed | cds-NP_011455.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:384688-386613:+ | gene-YGL060W_FaliES1 | rna-NM_001180925.1_FaliES1 | cds-NP_011455.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000144.1:9651-11576:- | gene-YGL060W_JAY291 | rna-NM_001180925.1_JAY291 | cds-NP_011455.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:392729-394654:+ | gene-YGL060W_MUCL30387 | rna-NM_001180925.1_MUCL30387 | cds-NP_011455.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:395777-397702:+ | gene-YGL060W_MUCL30388 | rna-NM_001180925.1_MUCL30388 | cds-NP_011455.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:392909-394834:+ | gene-YGL060W_MUCL39482 | rna-NM_001180925.1_MUCL39482 | cds-NP_011455.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:179274-181199:- | gene-YGL060W_MUCL42920 | rna-NM_001180925.1_MUCL42920 | cds-NP_011455.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:390065-391990:+ | gene-YGL060W_NCIM3186 | rna-NM_001180925.1_NCIM3186 | cds-NP_011455.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:384442-386367:+ | gene-YGL060W_NCYC1407 | rna-NM_001180925.1_NCYC1407 | cds-NP_011455.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:386098-388023:+ | gene-YGL060W_PE2H3 | rna-NM_001180925.1_PE2H3 | cds-NP_011455.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:391148-393073:+ | gene-YGL060W_PE2H4 | rna-NM_001180925.1_PE2H4 | cds-NP_011455.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:390065-391990:+ | gene-YGL060W_S288C | rna-NM_001180925.1_S288C | cds-NP_011455.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000096.1:25233-27158:+ | gene-YGL060W_SA1 | rna-NM_001180925.1_SA1 | cds-NP_011455.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:384939-386864:+ | gene-YGL060W_ThermosaccDry | rna-NM_001180925.1_ThermosaccDry | cds-NP_011455.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:495324-497249:+ | gene-YGL060W_VR1 | rna-NM_001180925.1_VR1 | cds-NP_011455.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:382302-384227:+ | gene-YGL060W_ZTW1 | rna-NM_001180925.1_ZTW1 | cds-NP_011455.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:387928-389853:+ | gene-YGL060W_Sparadoxus | rna-NM_001180925.1_Sparadoxus | cds-NP_011455.1_Sparadoxus | 85.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |